Gene
Gene Model ID | aug_v2a.01004 |
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Locus | scaf407 : 29336 ... 34296 : + |
To GenomeBrowser | scaf407:29336..34296 |
Genes list of scaffold | scaf407 |
Manual annotation
Study field | Retrovirus |
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Gene name | Adi-Retrovirus-related 39-40 |
Description | DNA sequence of this gene model showed similarity with that of Adi-Retrovirus-related 39-1. This gene model contains NB-ARC and NACHT domains. |
mRNA evidence |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.01004.t1 | gi|602682558|ref|XP_007453549.1| | PREDICTED: protein NLRC3 [Lipotes vexillifer] | 0.0 |
aug_v2a.01004.t1 | gi|466011253|ref|XP_004270290.1| | PREDICTED: protein NLRC3 [Orcinus orca] | 0.0 |
aug_v2a.01004.t1 | gi|470634544|ref|XP_004322821.1| | PREDICTED: protein NLRC3 [Tursiops truncatus] | 0.0 |
Transcript
Transcript ID | aug_v2a.01004.t1 |
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Definition | - |
>aug_v2a.01004.t1 cttggtgtgacgagttcaatttccagatacaggacattttcaccagacttaggatagttaaaaaagaaaaggcatgcgga caagagaccacaaatgaagtcaccaacatgacaagtatcttcacaccacacgagcgttgcaaacagcccttgattgtgtt gattgaaggcgaacctggtatgggaaagaccacctattgccaaaaactggtatttgattgggcaaacaaatcatgccgcg aatgggacgagtcttttcctagaattgatgtgctgctgcttctcaaatgtcgtggaattaaatcttctctctgggatgct gttgaagatcaaattctgccagacgagcttaagtcagaggaaaaagagatgtttttccaattcttgaaagaaaatccttc caaggtgttgcttgtgctcgatgggttagatgaggcagatccacaaaaactggaaatgttcttgaaacttattcaaagga agctgcttcctggctgttacgttattctcacatcccgtcatgaggtggggagaaaagtgaggccgttcaccgacactttg ttagagattgtgggattcacaacagctgatgcaaagtgttacataagaaagtactttcagcacgcggaacacttggcgaa agcacttatttcaaatgttgagtttgataaggatttaaagaaattaacaaggaatcctttaaacactcttctgctctgtg ttatcttcgaggatttaaagggagttctaccatccaacaggacgcagctttacgtggagattgttctctttgttttgaga cgttatgaaagcaagaacggcgtatcaaatagaggcaaagaccttttattagtttacaagaaggaactgatgatcctggg agaaactgcgctggattctctgtgtaaacaagacctgtatttcgatgactatggaggggatatcaaagaaagtttggtaa taaaatttggctttcttacgatccagtctggtggtagcaagagagctccttgcgaccgttatgggttttttcaccagagt ttccaagaattcttttccggttacttcctggccttttcttctattgatgatattacgaactcctactctgttctgaccga tgagagatacatgggtgaactacttcctgtccttagattcatgattggagtcgtagcatcgcgatccgaggaaactgcag tatcagtggtgcagagtatggcttcagttgtaaatgaaagatgccacacttgtgataacttcgtttttcgcttcactgtt gctaatgccttacttaatgaatgtaaaacttgttcaggagacctttacacaaaactagttcgtacccttggcgagagtct tcagttggttgacgtggtagcgaggccaaccttggatcaagagaacagctattttattgagacgtttttacgggccctcg cctttaactctaccgtttcaagcctcaaattgttttggtggaagcttcccactgatgttacagatctgctcgctcacgcc ctccgagtaaacacctctctttcttctttggatttgtatagaaattccattggtgttgannnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnaggccctcagagtgaacacctttctttcttctttgaatttgaattccaattccattggtgctgagg gagcaaattcacttgctcaggccctcggagtaaacacctctcttgcctctttggatttgtcagagaatcacattggtgct gagggagcaaattcactttctcaggccctaagagtaaataccactctttcttccttgggtttgtccaaagatggcattgg tgatgagggagcaaattcacttgctcaggtcctcagagtaaacacctctctttcttctttggatttatcttgcaattcca ttggtgctaagggagcaaattcacttgctcagaccctcagaataagcacctctctttcttccttggatttgtctaacaat gactttgccacgaaggaaacaaattcaattgctcatgccctcacagtaaacacttctctttcttttttggattttcattc aatctccattgatgatgagggagcaaattcaattgctcaggccctcagagtaaacaactctctttcttctttgaatttgc attcaaccttcattggcgatgagggagcaaaatcacttgctcaggctctcagagtaaacacctctctttcttctttagat ctgtctcggaatttcggggatgcaaagcaagcaaaatcacccaggagggtccagaaagaaaggaccgctctttctgtttt gatttgaagcttgatgtcattcgtgctgaatttgctcaagccagtggagtaaacactgatttaggttggtgtaccaattt gtttcgagttcctccggttgtcagccaaatcggtttgccttcttcttttgtgaatgtgcatttcaactctattggtgcta agggagcaaattcacttgcagaggccctcagagtaaacacctctctgtcttctttgaatttgcataccaactccattggt gatgagggcgcagattcactcgctatggccctcagaataaacacctcgctctgttctttggatttgtctgcaaattccat ttgtgctaagggagcaaattcagttgctcaggccctcatagataacacctctctttcttcctttgctttttcttacaatc ccattggtgctgagggagcaaattcacttgctcaggcccttagagtaaatgcctctctttcttctttgaaattggtatcc aacttcattcatgatgagcaagtaaattcactagctcaggccctcagagtaaattcttctctttgttctttggatttgtc tgagaattacattggttctgaaggagcaagtgcacttgctcaagccctcacagttaacacctctctttcttctttgattt tgaaacacaactccattggtgatgagggagcaaattcacttgctgaggccctcagaggaaacacccctctttcctttttg gatttgtctcacaatcccattgatgaagagattggaatttcacttgctcaggccctcagagttaacttgtgtctttttac tttggattacctggaacaacgttctttaacgttgcctgattataaatcatttcgaaaactattccccgtgttacatcaag cagacggaaaacctaatttgcattcgtgttttcatttgcattcatgggtgacttattgctccctcttttcgaagcgtaca ctgatggggtgaggatgaatcttccaggtttcggtcacccaaacgtgtggaagaagatgcattgctttcacagtccacgt ctaaaatgcacaatatggaaacatgttggctgttgaggttttccgaaactggtgaacaacgcgggagctagtttattttt aaagatacgtgatgggataaccaaacactttgctttttaccgctgtagcatagatgtagatacatgtgacctaaatgcgg acaggtgattaggtgctgttagcattttcaactcaagaaatatttaaaactcgaaagagaagaaactgattacctttaga attccaggccttgtgtgttgcgtctttcaaaatgtcaaaatgatttatttgcttaaagcctaagaaaaaagctcttgttg aacgtatgaaattgaaagtatgaacttcaatggttaaggcaaggggaagtgtatcaaaacctaatggtttggaaaataag ttttgagtcaaccactcaggatttttgtaatcttgctctgaacagctgggatatgatgagaattgttattttaaaagact caaatttagcagaagattaattataaattgtgatgtcgagttgtcttgagtgaaacggtatagattgttgaattctttaa gaaagccaccaatgtaaagaacagaattatttttgctttgtttctttttatggagtgtggcaatagcaaatacagctttt agttgtttggcaaattcaggttcgaatgctatgaaaatgccccatttgaattaaatatggaggaaagtactcgcatttat tactgtcaattgaatataagtgacacgtgaaatggtaaccaaaaaatataaaattgtctactactatattcatggctttt gaggccatgacattggatggtgtttgttagggaacgtttttattgttttgaagacaattacaaggttgagccagaggaca atttggagttggggggtgatctgcaaataacagctaatcgcttcaggagcacacaaggccacaacatgcagcaaatgctg gtacattttaatttctttgctcaaaggaaagattaagaatggtttttctcgaagtcttcaaatttttttaaacctctaaa agtcgttcatgtccaaattcaaatccttatctggctggggattcctgtattatgttgaatagttcattagattgtacttt gtgcgagaatgaatatactggtacgtgctacatgcgtggtggtccctctttagttggttgtgtctaatatctttttgtgt caacgaaggttgtcctccttgagtatatcacgtgtagtactaggttgctgaagtccaaagtccaagtaacagacaaaacg gagatacaaccttgttataaatgtaaagcatgtaaaagcagtagttagtaactagttggagtaagattaagagtttgtaa gaataagaacaagacttgagactgaattaaagtgtagattgacaacgcctaattcacttctcttcaattataataaaagg a |
Protein
Protein ID | aug_v2a.01004.t1 |
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Definition | - |
>aug_v2a.01004.t1 MTSIFTPHERCKQPLIVLIEGEPGMGKTTYCQKLVFDWANKSCREWDESFPRIDVLLLLKCRGIKSSLWDAVEDQILPDE LKSEEKEMFFQFLKENPSKVLLVLDGLDEADPQKLEMFLKLIQRKLLPGCYVILTSRHEVGRKVRPFTDTLLEIVGFTTA DAKCYIRKYFQHAEHLAKALISNVEFDKDLKKLTRNPLNTLLLCVIFEDLKGVLPSNRTQLYVEIVLFVLRRYESKNGVS NRGKDLLLVYKKELMILGETALDSLCKQDLYFDDYGGDIKESLVIKFGFLTIQSGGSKRAPCDRYGFFHQSFQEFFSGYF LAFSSIDDITNSYSVLTDERYMGELLPVLRFMIGVVASRSEETAVSVVQSMASVVNERCHTCDNFVFRFTVANALLNECK TCSGDLYTKLVRTLGESLQLVDVVARPTLDQENSYFIETFLRALAFNSTVSSLKLFWWKLPTDVTDLLAHALRALGVNTS LASLDLSENHIGAEGANSLSQALRVNTTLSSLGLSKDGIGDEGANSLAQVLRVNTSLSSLDLSCNSIGAKGANSLAQTLR ISTSLSSLDLSNNDFATKETNSIAHALTVNTSLSFLDFHSISIDDEGANSIAQALRVNNSLSSLNLHSTFIGDEGAKSLA QALRLDVIRAEFAQASGVNTDLGWCTNLFRVPPVVSQIGLPSSFVNVHFNSIGAKGANSLAEALRVNTSLSSLNLHTNSI GDEGADSLAMALRINTSLCSLDLSANSICAKGANSVAQALIDNTSLSSFAFSYNPIGAEGANSLAQALRVNASLSSLKLV SNFIHDEQVNSLAQALRVNSSLCSLDLSENYIGSEGASALAQALTVNTSLSSLILKHNSIGDEGANSLAEALRGNTPLSF LDLSHNPIDEEIGISLAQALRVNLCLFTLDYLEQRSLTLPDYKSFRKLFPVLHQADGKPNLHSCFHLHSWVTYCSLFSKR TLMG* |