Gene
Gene Model ID | aug_v2a.02543 |
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Locus | scaf829 : 3464 ... 10626 : + |
To GenomeBrowser | scaf829:3464..10626 |
Genes list of scaffold | scaf829 |
Manual annotation
Study field | Retrovirus |
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Gene name | Adi-Retrovirus-related 39-38 |
Description | DNA sequence of this gene model showed similarity with that of Adi-Retrovirus-related 39-1. This gene model contains NB-ARC and NACHT domains. |
mRNA evidence |
Transcript
Transcript ID | aug_v2a.02543.t1 |
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Definition | - |
>aug_v2a.02543.t1 cttgtgcttcgtgtccaagcgacgtcattgaggggatacgacagcgttaccagaaatgtgaaggggtgattttggcagtt ccctggagtggctatttaaatttccagatagaggacattttcaccagacttaaaatagttgcaaaagaaaagatacgcgg agaagccacaaaagaaatcaccaacatgacaagtatcttcacaccacacgaggggtgcaaacaaccgctgagtgtgttga ttgaaggcgaacctggtatgggaaagaccacctattgtcaaaaactggtatttgattgggcaagcaaacagtgtggcgaa tgggatgagtcttttccaggaattgatgtgctcctgctcctcaggtgtcgtagaatcaaatccaccatctggcacgctat tgaagatcaaattctgccagatgaaattaagccggaggaaaaagagatgtttttcaaattcttgaaagaaaatccctcta aggtgttgcttgtgctcgatgggttggatgaggcagacccaacaaatctggctatttactcgaagcttattacaaggaag ctgcttcctggctgttacattgttctcacatctcgccaggaagcgggtagcgaagtgaggccgtacacagacactttctt ggagattgtgggattcactacaactgatgcggagtgttacataagaaagcattttcaacaggcaaaacacttggcagaag cacttatttggaaagttcagtctgataaagatttaaggcaactaacaaaaaaccctttaaacactcttttgctctgtgtt atcttcgaggatttgaagggaattctaccaacgaacaggacgcagctgtacgtggaaattattctctttattttgaggcg ttatgaaagcaataacggtttatcaaatagaggtgaagaccttttattagtttacaagaaggaactgatgctcctaggag aaacggcgctagattctttgcgtaagcaagagctttatttcgatgaccacaaaggagatatcaagcaaagtttgctgatg aagtttggctttctctcgatccagtctggtggtagcatgagagctccttgtgaccgttacgggttttttcataagagttt tcaagaattcttttccggttacttccttgccttttctatcattgacggtgttaaaaactctgactcagtactgactgatg acagacacacgaatgaactattttatgtttttaaattcatgattggaatcgcagctcagcaatccgagaaaactgcattg tcaattgtgcaaagtattgtatcgattgtaaataaggcatccggctcacctcgtaaatcactttctaagttagatgtggc tattaccttaattaacgaatgcaaaagttgttctggagacctttacgcagaattagttcgtacccttggcgccaatcttg aattggttgatctgggaccggggcagtacctcttgctacagaatagtgaatttagagagacatttctccgggcccttccc tttaactccaccctttcaagcctgcgcttgtttgggtgtgagttagatcctaaggttaccaatatgctcgcaaaaaacac ctctctttcttctttggttttgctctacaatagaattggtgatgagggagcaaattcacttgctcaggccctcnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn 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nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgttaatttattagcatgtagc cagtcactgacctttaccaattccgtgtttacaattgtctctaaagattttagatttttatcagcatatctagtcaggct ttcaagatatttcttggtgggcaattggtcgcttagaatattgttaaattggccatgagctgaaaaaagattgataccat aataaggtaattcgcgcaaaagtgacttggatatgttagagctattatcgcgcttcattataaaaaatgatgaaataaaa ttgatgaaacaaaatcaaagaataagacagttactcagctgtcagtttctgcagtacgaaagtctcctgctagtctttgg agtccaccaaggtctttgatcttgatcggccgtgactcgctatctctcctcagataaacaacagagtccttcgcccaaca atactgataattgtttcgatccttgaacttcttggcttcaaagagtacctgctgaagtctaggactcaagtgatcaaaaa ttcttacggcacccagggagacatcctcagagaagccaagtccgctagggtcaactttacatgcgtctcgttgacgattc atcacctcagattttgccaggcgtctaataaacttgcaaattatgggttttggtccgccatcttgatctctccgaggtac acgatgagccacatccaggtcctgcagcgataccactgctcccatgccattaaaaagagcaacacaaagatcgctcgttt ccctcgccgtttcctggtgtttaatttctgggacatttataattttcacattgaattggtagctataatcctgaaggtcg tccacggccttaccgacagcgtccactttggagcttagctcggttagtcgagaactgagacgctgaatctcactttgggc ttgacgtcggaacttgctaaggtcatcatactctttgctgtaaaattctaggttcgactttgtttctgcatcgagagaag tgccttgggtgtcaagagattctgtagctcgctgatgcgtgatcagacttttcaaactctccaactccgctgaaagtgtt tgaatctgttgctttagctcttgattttctctacgtagtgcggcagccatacttgtaaaagctatcccgaaaagtttaag ataaaaattgcgttcaggttaaaggttttctgtgcaaagatgacagagctcaaaatcaagcgtccattttgtcacacgct caccgctgacctccaatcaatggtgaacacgttgtcatcatttttttgacattacaggttaccatagcaacagtatgacc tcttaaaaacacccttaattacagctttaggggcttataattcaaaaatggcaaggtgaaatttttttatattatcagca tgataagacgcaacttttagcaaagtttaaaagaattctatacatagggttccgagccaccttaaattttcgaaaattta aggaatttaaggaaaatttaattcttgacagtctcaagcatgttttagcttctatccttgtacaacgtgcaagtgagctt gtaaataagcaaattctaaccatcttagaggccgaaacgagcaaaattaccgaatcccatgttcgaaagatgccttgctt gtacgtcacgcaacggtatgtcacacgccttttaatatggaaggcccgcacaaatggagtgtttgagtgaaaacgttcag gcgcaagaatctcgtaggataattttatttttcccgctgtctctctctttcaaccttttggtttcgtcgattaaattatt ttaggtccggactagcctgagtatcaggcgttcctaaggggaaaaggggaaggagagaagcgaaaggaaaggaacgcctg acacagacgcttttactggagccttccacccccacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnaaagctgcagaaatggcagaaattctgaagaacgtccaccacaattttgtaccaa aaacagaagtttgcaaccaaacagaagtattgcagaaagtattcttggatggggatcagctcactgaagagagggccagg aatgcacaattagccaacaccctggctgatacaccatatgagcgtttgagtggcctcgaaacagctttcgctgattggca cttgggcaagaaccttcttatggttagtatacaaagccagcatgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn cttttagctccaaaataagttgtttacgtgtttattaatattgttttttaagatatattttcagttgtttgtcaaagagg attcagcagcagaactggggactagttattcctcaatgaaccgaaatggcaagacaaatgctaagaaagggccagaaaga gactataatgcctacaaggaattttttgaccgcgagagtgaagctcatgtccttgctaaatggatgaactttgctggaat taacaacattgaaggtttgatattaggaaacttgctgtcacttgcagagttaagaataaattaaataaatttttcaacat aaatctttggatcatggtaactgaacatacctcatctgtttcttaagaagtaacaaattgttatgcaacacttaattacc ttttagataaaccccttaaaagacccatacctacagaggtggagaaatggactgtggctgaaaagtcaaactggattcat acagaagttaaagactttctcagtgagatctttctgagaccaaatgacctagctgagatggttgatcagttagatgctgc ccataaagaaggttttcagtgccgaagtcaaggatgccttgcagtgtttccccttcattcaagtagggtcaggtcagtgt taggatttcacttgtctctaagtgcaataattttacttacagacaaaggaaatccacatgtgcaaaaaatctttcatttt agacatgagatatcacagcaccctgaactagacgtagagagtgatggtgatgcagacagagacagcttgggatattacaa gtgcagaggtggtgcctgccgccaagtcttcaccactagtgcaaccagaaagaggtatatttacatgacatggtttaatg ttatcccttgtttaacatttactttccttctttaaaacttaagaccatacgttaacatatcaaaaaacagtttaaggaaa ctaaaatctaaacctttcccaaaattaaagaacaacataaaca |
Protein
Protein ID | aug_v2a.02543.t1 |
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Definition | - |
>aug_v2a.02543.t1 MTSIFTPHEGCKQPLSVLIEGEPGMGKTTYCQKLVFDWASKQCGEWDESFPGIDVLLLLRCRRIKSTIWHAIEDQILPDE IKPEEKEMFFKFLKENPSKVLLVLDGLDEADPTNLAIYSKLITRKLLPGCYIVLTSRQEAGSEVRPYTDTFLEIVGFTTT DAECYIRKHFQQAKHLAEALIWKVQSDKDLRQLTKNPLNTLLLCVIFEDLKGILPTNRTQLYVEIILFILRRYESNNGLS NRGEDLLLVYKKELMLLGETALDSLRKQELYFDDHKGDIKQSLLMKFGFLSIQSGGSMRAPCDRYGFFHKSFQEFFSGYF LAFSIIDGVKNSDSVLTDDRHTNELFYVFKFMIGIAAQQSEKTALSIVQSIVSIVNKASGSPRKSLSKLDVAITLINECK SCSGDLYAELVRTLGANLELVDLGPGQYLLLQNSEFRETFLRALPFNSTLSSLRLFGCELDPKIYFQLFVKEDSAAELGT SYSSMNRNGKTNAKKGPERDYNAYKEFFDRESEAHVLAKWMNFAGINNIEDKPLKRPIPTEVEKWTVAEKSNWIHTEVKD FLSEIFLRPNDLAEMVDQLDAAHKEGFQCRSQGCLAVFPLHSSRVRHEISQHPELDVESDGDADRDSLGYYKCRGGACRQ VFTTSATRKRYIYMTWFNVIPCLTFTFLL* |