Gene
Gene Model ID | aug_v2a.04086 |
---|---|
Locus | scaf1505 : 33607 ... 38445 : - |
To GenomeBrowser | scaf1505:33607..38445 |
Genes list of scaffold | scaf1505 |
Manual annotation
Study field | Retrovirus |
---|---|
Gene name | Adi-Retrovirus-related 20-39 |
Description | DNA sequence of this gene model showed similarity with that of Adi-Retrovirus-related 20-1. This gene model contains Rapsyn_N, TPR_1, DUF2977 and TPR_2 domains. |
mRNA evidence |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.04086.t1 | gi|543362005|ref|XP_005524394.1| | PREDICTED: tetratricopeptide repeat protein 28 [Pseudopodoces humilis] | 0.0 |
Transcript
Transcript ID | aug_v2a.04086.t1 |
---|---|
Definition | - |
>aug_v2a.04086.t1 nnnnnnnnnnnnnnnnnnnnnnnntctcaaaagaaatggctgaccaagagggaagtgaaggagtccatgtgagtcacgga agagatttacagtcactaagcgaaaatcaaaaagctcttaagtatcaagaaaaacgattgaaatttgcaataaaaacagg tgatcgggccggagaggaaagagcctatgaatatctcggtaatgcttaccagtcactatgtgactatcgaaaagctattg aatgtcatgaaaagtggttgaaaattgcaatagatatcggcgatccacctggagaaggaagagcctatgaaaatctcggt attgcttaccagtcactatgtgactaccgaaaagctattgaatatcatgaaaaacggctgaaaattgcaataaaaatcgg tgatcgggccgcagaaggaagaggttatggaaatctcgatattgcttaccagtctcttggtgaccatcgaaaagccgttg agtatcatgaaaaacatttgaaactcacaatagaaattggtgatcgaggcggagaaggaagcgcctatggaaatctcggt aatgcttactgcttaaagggtgactaccgaaaatccattcagtaccttgaaaaacatttgaaaattgcaaaagaaatcgg aaatcgagctgcagaaggaatagcctatggaaatctcggtaatgtttaccagttgctgggtgactatcgcaaagcgattg agtataatcaaacacatttgaaaattgcactagaaatcggtgaccgagcgggagaaggaagatgctatggaagtctcggt aatgcttggaccacactgggtaactatcgaaaagcgattaagcatcatgaaaaacatttgaaacttgcaaaagaaattgg tgatagggctggagaaggagcagcccatggagatctcggtaatgcttaccaatcactggccgactatcaaaaggccattg agaatcatcaaaggcatttaaaaattgcaacggaaatcggtgatcgggctggagaaggaatagcctatggaaatctcggc agagcatacaactcactgagtgactatcgaaaagccattgagtaccatggaaaacatttaaaaattgcaattgaaacctt tgatcgggccggagaaggagtagcctatggaagtctcgctaatgcttatcagtcgctgggtgagtatcaaaaagccatta cgtatagcgaaaaacaattaaaaatcactagagaaattggtgatcaagccggagaaggaagagcctatggaaaaattggt attacttacgactatctaggagaacatgaaaaagccattgagtatcttcgaaaacaattaaaaattgcactagaaaccgg tgatcgggaaggagaaggaagaggctatggaaatcttggtaatgcttaccactctctgggagactatcgaaaggccattg aacttaatgaaaaagccttgagaataacaaaagaaatcggtgatctggccggagaaggaggagcctatggaaacctcggc aatgcttaccagtcactcgatgactatcgaaaagccattgtgtatcatgaaaaaatttgaaaattgcaatgaaaataggt gatcgacgcggagaaggaagcgccaatggaaatctcggtaatgcttattactcacagtgtgactatcgaaaagccattga ttactatgaaattttgttgaaaattgctattgaaatcggtgatcggaacgcagaaggaagagcctatggaaatcttggta atgcgtacaagtcactgggcgactatcgaaaagggattgagttccatgaaacacacttgaagtttgcaatagaaatcggt gatcgggccggagaaggagcaatctatggaaatctcggtattgcttaccagtcactgggtgaccacagaaaagggattga gtatcacgaaaaacatttaaaacttgcaaaagaaatcggcgatcggcgcgaagaaggaagagcatatggaaatctcggtg ttgcttaccattcactgggtgactatcgaaaatccattcagtatcatgaaaatcaattaaaaattgcaaaagaaatagat aatcggagtggagaagggcgggcatacggaggtctcggtactgcttacaattcactaggtgactatcaaaaagccattga gtaccttgacaaagatttgaaaattgcaatagaaataggagatctgtccggagaaggaggagcctacggaagtctcggta atgcttaccactcactggctgactatcgaaaagccattgattaccatgaaaaacatttgagtattgcgatagaaatcggt gatcgggccggagaaggaggagcctttggaagtctcggaaacgcttacaagtcactgggtgactgtcgtaaaggaattca gtatcatgaaaaatatgagaacattgcaatagaaatcggtgatcgagctggagagggaagagcctatggatatcttggta atgattacatgttactaggtgactatcgaaaagcgattgagtatcatgaaaaacatttgaaaattgcgttagaaatcggt ggtcgggacggagaaggagtagcctatggaagtctcggtaatgcttaccagttaataggtgactttaaaaaagcaactaa gtatcttaaaaggctcttgaaacttgcaagagaaattggtaatcgggaaggagaagggaaagcccatggaagtctcggta gtgctctctacttagagggtgactaccaaggatccatcgagcaccttgaacagtttttgaaaattgcaatagaaatcggt gaccgggcgggagaaggaacagcctatggaaatctcggtaatgcttaccagtcactgggtgactatctaaaagcaactga gtatcatgaaacacaattgaaaattgcaatagaaatcggtgatcgggccttagaaggaagagcgcatggatgtctcggta atgcattcgcctcactgggtcactatggaaaatctattaattaccttgaaaaacagctgaaaattgccaaagaaatcggt gatcgggcaggagaaggaatggcttatagcattattggaaacgtgtacttttctcttgaacaattcgaagtcgcggtgga taattttgttgatgcggtggatactctcaattccttacgatctcttttgaagtctgaagatacttggaaaataaactttc gtgagcggcaccaggcgagctacactgccttatggaggtcgttacttagaattggaaaggtcgatgaggctttgcttgct gctgaacaaggacgggcgcagtctttgtctgacaatttattgattcaatacaaactacctgcatccttatcagctgccat aattgacaacaaagcgacaacatttctcctctgcacagagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaa gcaacaaaagttgaagtgatgaaacggatgtcaacagttggtttaattcatattgctgcgcacggaaacaaggtcactgg agaaattgccttatctccaaaccctggatggacttcacaattccctcaggaagaggatttcattttaaaaatgtccgatg tacaggctgccaatcttcgagctcgtcttgtggtgctaagttgctgccacagtggaagaggcagaatcctgaggggtgag ggagtggtcggtattgcacgtgccttcttagcagctggtgctcgttctgtgttggtggccctgtgggcaatagatgacga agctactatggtgtttatgaaaactttctaccaacacctgaaagaaggaaaaaccgccagtgttgctgtctcccgatcga taaaatcccttcgcgaatctgaaaagttttctgagatgagatactgggctccattccaacttataggagatgacgtcaag attgaattcgaggcagatgatgtcaaaaaacgcaagaaatgactatcccatcgtttcttttgtttttgtagtaaccagta taataggtttctctggctgttttacttgtcggtaatgcattgtaaaggattaatagcccacttttgagttcacttgagcc tttctttaaaggtaagtctacgtggctgcgaaatcttag |
Protein
Protein ID | aug_v2a.04086.t1 |
---|---|
Definition | - |
>aug_v2a.04086.t1 MADQEGSEGVHVSHGRDLQSLSENQKALKYQEKRLKFAIKTGDRAGEERAYEYLGNAYQSLCDYRKAIECHEKWLKIAID IGDPPGEGRAYENLGIAYQSLCDYRKAIEYHEKRLKIAIKIGDRAAEGRGYGNLDIAYQSLGDHRKAVEYHEKHLKLTIE IGDRGGEGSAYGNLGNAYCLKGDYRKSIQYLEKHLKIAKEIGNRAAEGIAYGNLGNVYQLLGDYRKAIEYNQTHLKIALE IGDRAGEGRCYGSLGNAWTTLGNYRKAIKHHEKHLKLAKEIGDRAGEGAAHGDLGNAYQSLADYQKAIENHQRHLKIATE IGDRAGEGIAYGNLGRAYNSLSDYRKAIEYHGKHLKIAIETFDRAGEGVAYGSLANAYQSLGEYQKAITYSEKQLKITRE IGDQAGEGRAYGKIGITYDYLGEHEKAIEYLRKQLKIALETGDREGEGRGYGNLGDRRGEGSANGNLGNAYYSQCDYRKA IDYYEILLKIAIEIGDRNAEGRAYGNLGNAYKSLGDYRKGIEFHETHLKFAIEIGDRAGEGAIYGNLGIAYQSLGDHRKG IEYHEKHLKLAKEIGDRREEGRAYGNLGVAYHSLGDYRKSIQYHENQLKIAKEIDNRSGEGRAYGGLGTAYNSLGDYQKA IEYLDKDLKIAIEIGDLSGEGGAYGSLGNAYHSLADYRKAIDYHEKHLSIAIEIGDRAGEGGAFGSLGNAYKSLGDCRKG IQYHEKYENIAIEIGDRAGEGRAYGYLGNDYMLLGDYRKAIEYHEKHLKIALEIGGRDGEGVAYGSLGNAYQLIGDFKKA TKYLKRLLKLAREIGNREGEGKAHGSLGSALYLEGDYQGSIEHLEQFLKIAIEIGDRAGEGTAYGNLGNAYQSLGDYLKA TEYHETQLKIAIEIGDRALEGRAHGCLGNAFASLGHYGKSINYLEKQLKIAKEIGDRAGEGMAYSIIGNVYFSLEQFEVA VDNFVDAVDTLNSLRSLLKSEDTWKINFPTKVEVMKRMSTVGLIHIAAHGNKVTGEIALSPNPGWTSQFPQEEDFILKMS DVQAANLRARLVVLSCCHSGRGRILRGEGVVGIARAFLAAGARSVLVALWAIDDEATMVFMKTFYQHLKEGKTASVAVSR SIKSLRESEKFSEMRYWAPFQLIGDDVKIEFEADDVKKRKK* |