Gene
Gene Model ID | aug_v2a.04158 |
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Locus | scaf1525 : 82706 ... 87042 : + |
To GenomeBrowser | scaf1525:82706..87042 |
Genes list of scaffold | scaf1525 |
Manual annotation
Study field | Retrovirus |
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Gene name | Adi-Retrovirus-related 20-49 |
Description | DNA sequence of this gene model showed similarity with that of Adi-Retrovirus-related 20-1. This gene model contains Rapsyn_N, SHNi-TPR, TPR_4, TPR_1, TPR_2, RPN7 and DUF2977 domains. |
mRNA evidence |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.04158.t1 | gi|488540304|ref|XP_004461762.1| | PREDICTED: tetratricopeptide repeat protein 28 isoform X6 [Dasypus novemcinctus] | 0.0 |
aug_v2a.04158.t1 | gi|532101020|ref|XP_005336131.1| | PREDICTED: LOW QUALITY PROTEIN: tetratricopeptide repeat protein 28 [Ictidomys tridecemlineatus] | 0.0 |
aug_v2a.04158.t1 | gi|340710340|ref|XP_003393750.1| | PREDICTED: LOW QUALITY PROTEIN: tetratricopeptide repeat protein 28 [Bombus terrestris] | 0.0 |
aug_v2a.04158.t1 | gi|380014705|ref|XP_003691361.1| | PREDICTED: LOW QUALITY PROTEIN: tetratricopeptide repeat protein 28 [Apis florea] | 0.0 |
Transcript
Transcript ID | aug_v2a.04158.t1 |
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Definition | - |
>aug_v2a.04158.t1 atagttgttttgaaacaatttctctcaccttaacatttcacattaggttattgatatcacttactattgcacaacatgaa attctgggaagttaaatgccataacgtcccaaaacatccatcagaacctattaaacgaattcttgttgcccaccaaacag attcttattcactgttttggatgtacatgtaagttgtgctttaaggaaaactatagtctaacacaccgtgtccagacagt attgtacggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtatcatgaaaaac atttgaaaattgcaaaagtaatcggtgatcgagcaggagaaggaagagcctatggaaatctcggtaatgcttaccactca ctgggccacttccgagaagccattgagaatcataaaaacatttgaaaattgcaacagaaatcggtgatcggccaggagaa ggaggaggctatggaaatcttggtaatgcttttcactcactgggcgacttccaaaaagccattgagtatcatgaaaaaca tttgaaaattgcaaaggaaatcggtaatcgagcaggagaaggactggcctgtggaaatctcggtaatgattacaagtcac tgggtgaatttcgaaaagccattgagtatcatgaaaagcttttgaaaattgcaaaagaaatcggtgatcgggcaggagaa ggaacaggctgtggaatctcggtaacgctaacaactcactaggtgactttcgaaaagccattgagtatcttgaaaaacat ttgaaaattgcaaaagaaatcggtgatcgggcaggagaaggaggaggctatgaaaatctgggaattgctttttattcact tggcgacttccgaaaagccattgagtatcatgaaaaacatttgaaaattgcaaaagaaaccggtgttcaggccggagaag gaggagcctatgggagtctcggtaatgcttaccactcactgggtgatttccgaaaagccattgagtatcatgaaaaacat ttgaaaattgcaaaagaaatcggtgatcgggcagcagaagcaggaggctatggaaatctcggtaacgctaactactcact tggtgactatcgaaaagccattgagtatcaagagaagtacttgaaaattacaaaagaaatcggtaatcgcaccggagaaa gacgagcgtatggaaatctcggtcatgtttaccactcaatgggcgacttccgaaaagccattaagtatcatgaacaggat ttgaaaattgcaatagaaattggtgatcgcgccggagaaggaggaggccatggaaatctcggtactgcttactactcact gggtgaatttcgaaaagccatggagtatcatgaaaaacatttgaaaattgcaaaagaaattggtgatcgggctggagaag gaatagcctatacaaatctcggtaatgctcacaactcactcggtgacttccgaaaagcaattgagtatcatgaaaacgat ttgaaaattgcaatggaaatcgattctcggacccaaaaaggaagtgcatatggaaatctcggtaacgcttactattcact gggtgaatttcgaaaagccatggagtattatgaaaaacatttgaaaattgcaaaagaaatcggtgatcgggcaggacaag gaaaagcctgtggaaatctcggtaatgcttactacctcctgagtgactttcgaaaagccattaagtatcatgaaaaacat ttgaaaattgcaaaagaaataagtgattgggcaggagaaggaggagcctatgcaaatctcggtaatgcttactactcact gggtgacgtccgaaaagccattgagtatcatgaaaaaggtttgaaatttgcaaaagaaattggtgatagggctggggaag gaggagcctatgcaaatcttggtaatgcttaccactcactggatgactttcgaaaggcaattgagtattatgaaaaacac ttgaaaattgcaaaaaataccggcgatagcgtcggagagggaaggatttatcacaactttggcacggcatactttaatct tggacagtttgacattgcagtagataattttgtttccgctgttgatacctttaatactttgagatctctattgaagtctg aagataactggaaaataaaatttcgagaggtgcatgagatgacgtacactttcttgtggaggtcactgctaagaattgga aaggtcaacgaggctttgtttgctgctgatcaaggacgagcgcagactttgtatgacaatttgatgaatcgatatggact cgtttcgcccttatcctatgccacatttcactccaaggagacaacaattcgcctcttcacagagctttcttcacaaatta tctttctcggacttgaaggacttgagatcaacatttggtttctgagcaggggacagaaagttgcatttcggcaaaggacg ctagaggctgatatcaaagagaaagatcccatacgggcattactacaagcagctttaagaaaaatcggagctgaagttga agtgagatgcgaagatcgctcatttgatgaattcgacggtgaatgctcttcaagcagcgaagtgtgcaaagaagtggaaa agccatgtcagtcttcagacaatcctttccggccattttatgaagcagttattggtccaattgttgacttgcttggatct caatacgacgagttggtcattgtttctgacggtgcgctgtgctttacgccatgggccgcaattgttgaatcgattaggat tcgcactgttccttctcttaccagttatcaattgatctcaagtgtacccgagggccgttacaagacaggggcgcttttgg tcggaaatccgtgcttaaacgagttggagaaacctccactcgacttaccatatgctcaagaggaagtagaaatgattgca tcaattcttaacactagacctctaacagggagagaggcaacaaaagctgaagtgataaaacagatgtcgtcagttggttt aattcacattgctgcccacggaaacaagcacactggagaaatttgcttgtccccaaaccctggatggacttccaagttcc ctcaaaagaatgattttattttgaaaatgtccgatgtgctagcagccaatcttcgagctcgtcttgtggtcttaagttgc tgtcacagcggacgaggccgaatcttgaagggggagggtgtggtcggcatcgcacgtgccttcttggcatctggtgctcg ttgtgtgttgatatcgctgtgggcaatagacgacgaagctaccatgatgttcatgaaaagcttctaccaacatctgaagg aaggaaaaaccgccagtgttgctgttcaccaaacgatgaaatcacttcgtgaatctgagaagttttctgagatgaggtac tgggctccattccaacttctcggagatgatgtcaagattgaattcgaagcagatgatgtcgtcaaaaattagagaaataa cacttttttgtgtgtatgttcttgtcaacatcgtgtataaccagcgtaataggtttctcaattactactattattcctat aaaaggtgctcaacaat |
Protein
Protein ID | aug_v2a.04158.t1 |
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Definition | - |
>aug_v2a.04158.t1 MKFWEVKCHNVPKHPSEPIKRILVAHQTDSYSLFWMYMRRNRLWNLGNANNSLGDFRKAIEYLEKHLKIAKEIGDRAGEG GGYENLGIAFYSLGDFRKAIEYHEKHLKIAKETGVQAGEGGAYGSLGNAYHSLGDFRKAIEYHEKHLKIAKEIGDRAAEA GGYGNLGNANYSLGDYRKAIEYQEKYLKITKEIGNRTGERRAYGNLGHVYHSMGDFRKAIKYHEQDLKIAIEIGDRAGEG GGHGNLGTAYYSLGEFRKAMEYHEKHLKIAKEIGDRAGEGIAYTNLGNAHNSLGDFRKAIEYHENDLKIAMEIDSRTQKG SAYGNLGNAYYSLGEFRKAMEYYEKHLKIAKEIGDRAGQGKACGNLGNAYYLLSDFRKAIKYHEKHLKIAKEISDWAGEG GAYANLGNAYYSLGDVRKAIEYHEKGLKFAKEIGDRAGEGGAYANLGNAYHSLDDFRKAIEYYEKHLKIAKNTGDSVGEG RIYHNFGTAYFNLGQFDIAVDNFVSAVDTFNTLRSLLKSEDNWKIKFREVHEMTYTFLWRSLLRIGKVNEALFAADQGRA QTLYDNLMNRYGLVSPLSYATFHSKETTIRLFTELSSQIIFLGLEGLEINIWFLSRGQKVAFRQRTLEADIKEKDPIRAL LQAALRKIGAEVEVRCEDRSFDEFDGECSSSSEVCKEVEKPCQSSDNPFRPFYEAVIGPIVDLLGSQYDELVIVSDGALC FTPWAAIVESIRIRTVPSLTSYQLISSVPEGRYKTGALLVGNPCLNELEKPPLDLPYAQEEVEMIASILNTRPLTGREAT KAEVIKQMSSVGLIHIAAHGNKHTGEICLSPNPGWTSKFPQKNDFILKMSDVLAANLRARLVVLSCCHSGRGRILKGEGV VGIARAFLASGARCVLISLWAIDDEATMMFMKSFYQHLKEGKTASVAVHQTMKSLRESEKFSEMRYWAPFQLLGDDVKIE FEADDVVKN* |