Gene
Gene Model ID | aug_v2a.04538 |
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Locus | scaf1670 : 41721 ... 47286 : - |
To GenomeBrowser | scaf1670:41721..47286 |
Genes list of scaffold | scaf1670 |
Manual annotation
Study field | Collagen |
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Gene name | Collagen Domain Containing Protein21 |
Annotation by Blast2GO
Annotation | GO |
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collagen alpha-2 chain isoform x2 | GO:0005578 GO:0005581 GO:0009653 GO:0030154 GO:0030198 GO:0048513 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.04538.t1 | gi|449676568|ref|XP_002164888.2| | 4.0e-29 | |
aug_v2a.04538.t1 | gi|156406454|ref|XP_001641060.1| | predicted protein [Nematostella vectensis] | 1.0e-25 |
aug_v2a.04538.t1 | gi|56270269|gb|AAH86874.1| | COL5A2 protein [Homo sapiens] | 3.0e-22 |
aug_v2a.04538.t1 | gi|667333329|ref|XP_008592239.1| | PREDICTED: collagen alpha-2(V) chain, partial [Galeopterus variegatus] | 3.0e-22 |
Transcript
Transcript ID | aug_v2a.04538.t1 |
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Definition | - |
>aug_v2a.04538.t1 gccccggtggtcccggtaatccgggaaacaagggaagtcacgggaagaatggggatgctggtcccatgggagatgttggt ccccctggggaatctgggtttgtaggtcttcctggcgaggatggattgagcggtgtaagaggcatgccaggcaaaccagg ggagccaggagaaatggtacgtagaagaacttgaaatctgtacatgaatccctcgaacatctctttgtatcgtgtccgat tgttacaacgtttggcagtggtttaattggtgggtatagaggtttaaatgtgaaaattgaagcattcggcgttttagata tattagggagcttaagcaaccacgacgacgacggcaacaaaaaccccacaaatttgcatatttgacagtgaaaaacagta tttttgcacgctttgcacgtgcatttttcatcttttgacattttgaagacgttctcgttctttcacgacgtgaaatgacc tgtgtggacgacgtgagcatatgatgacaaatgttcaattttatcttatgtccaaagcgctggttccaatttaattccag gatagttagaacacatttttcaagcataatgagtttgaataattgaaaaatgattgcagaaacgcgaagtcacattttca tttgacgttctcgctttcgtcgacgtcgtgtttgcttaagctccctaatatttggcctatgggaacggaagaaggattat ttgtggatgagtagtcatatattcaaaagatggcaggagtataacgtccagaatattcttttttgagcccaggtggggtt ggtgaaaggatcaaattaacttgacatatgaaatacaatcatgtttagggcgattctggtgaaggaggacccactggaga acaagggcctgtaggacctatagtaagttgtaatcatgctatttttgtgacctatactgttcgacttcaagttatccttg gctacaactttttctttatttgagtttattttttcctgtttcgtgcccgtagggttcaccaggagatgcaggacaatctg ggatgagaggagacgaggtgaggatgaactactttagcaggtcgagaagaagagaccctatgtatttccatacactttct gtaattggagaaacgaaacaatggatgctaaaacacaaacaaccctgatagcaatagaaacgacaggtggtctgggagag accctgtgcctcagacacggtctgtgattggagaacgaaacagtggatgatcgacgtctttctttctttcagggagaagt cggaaggcctggtggctcaggacctatcggggaaaaaggacgtccggtaagacggcttcttttgtcgaagacagaagaac tttatcaacttgtatcgtttctcatacacaacaagactactgttaagtcataattttaggtgtgaaatgccttatgttag tgttgatggaactcgtgggcatttccgaatgcgacatgaattttttcatatgctagttaaaatcgtggaaacttaagaga ctggaagcaaacaacgtaatttcatgtatcagttatcgcttgaactaaatgtgtgcgtcggcaagttcgtttccaggtcc cttcctgtcgaacctgaggctagatgaaactgaaaacacggcgatgatcacttcaatattttttaacattaactgataat tcgggttttgcttgtgttttctgtttagggactaggtggtgttcctggaagaagaggattgcaaggtcctccaggaaaaa tagtgagaaacaaaagttgcaagatattttgaaaagttttgaattattaacgcatgtgaaatccagccttcctctcccca agagcttattttcctgattaaacttgatttgacagatatgttaatagtgaaccttttttcgactgttttgaggagtcgat aagtaggagcatgcaattcccataataagcctatgtcacggcatttttacagacttctcttttttgagtgtaccttttct tttgtgaaagaaaggcagttccggtccagtgacgctgtgatgtcaatcagcttcttgtgactggccatgacactcccacg ggagtcacattccatgggagttcggtttaaaaataaaccggtctatgaaaacgcagtgacagcaatgtagtagagttgca tgctccttctcatcggctcctgctgttttccattgtttctttttgtcagggcnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnngtatattttttcagggtgaacgcggtggcaaaggattcgacggcctcaacggtcctgagggactatcggtagagca tctagcctgtgttatttcctaactgccctgaaaaacagttttggcggagaataaaattgaacattgagaaatggtagtag gtctcgctgcggtgattgtgagaaaagcttaaaggcagcgcctggaaatttccaagaagggatcaaatcgagaagcaagt ttgccttcgctggaaggagaggcttttacatttattggagcataaatgccgtctttcagaccttttctttcatactacat aacagtcggatctttcagttgacttctttttgtcttgtcttgacgttagtaacgctgtcatataattagtcttgaatcga tcttaagttggtaaacgtatcgatttatttacctcactagggcttcaaaggaaagcgcggtcgaaaggggtcgagaggtg aacctggagatctggtaatgtttcttttcaaacactaaaattattgcattacgattttgataaataacactgatggttgc gatatctggtaatttttctctttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaattagggag acgttggtttgagtggttcccgaggaatagctggagatagggtaagattttcacttatatgagcgctagagcacgaagaa agtcagagaaatggcatactgcatgtaatcgtcctcagaggaacatgttttcgatgaaattcagtaaatttaatttttgg aatcagcattttcaatgtgcctctccttattcaagaaaatactactttacgatatttagctgttcggcgccgtctatgag tgaccttattcttgattacgcaaatctacatttatctttattagaaaaactaacgccccttattagttcggaattgctga gataattcaaggctcattcacagagttagttggattagcagataccattttccggaaaaaaatgaatgcactattagggg ggttggtgaaggacattaatctcaaggtgcgcgcataaggtaatatcacaaaatgtaggataacgatgttgagcttaatt ttgtcagggtcgcgaaggacgacctggaatgggaggaatggctggcttgccaggaaatggggtaggtcattgacggataa tgaagttgttgctttcccagacatctcatttaatttctattcagtgagcggtttcttgaatgttttgtacacctttccca acatggattagcccatcatgaaaaaaaaatggaagcggaaatgaagcaaaagaaattataccattagggttttctccaga ctgcgagtggtctctgatagtggtcgttatagttatcagtgattttgttacataaaccaggctaatgggtgatttgtcca ttacactaatccattagcctcgtctgcaggtagctgtaaaccacaaaatgttttgcctgtaggctcagctattttggcga gcaatttgggtcgaaatgctctcacgcaagaggagtgccgaaaagtcgattaatcgcaaagttgggtttctcagagtatt ttgtcaatattttcgaattcttcgtcgcaatgaccttcataaattgagtgaacaagatttttagaaataatgcttcaaag tcccaggttatctaaaagaactcctgctgacctagattgctcaactaggttctagattttaatctaagtttgagtgatct acgtcttacactcaacagggtggaaaaggagaagatgggatccctggagagcaaggtggactggtaagacatgtaatgtt gacgtttttgctaagcgacgttgttttttttattgttttgtttgtttgtaatggcagatttcggcagcaactgcagaata cccggtcctggagcctgtttctcaaaagtcccgaaagttttggggtctatttcggggccacaattcactttatattgtcg caacgctgaggttctaagccattaaagttcgcaatactcatggttattcttacattaaaaagtaacagaccagcttttca aaacaagcggattactgtttgacaactgtttttcagacctgaaaagttctcgggactttctagaaacagtcccctgctgg ttttgtatttttggtggtttcagtgagtcatgctgaagtgacgtgacgctacgccggttcttgccaagctaagtcacttt acgctactgtaagctagtcgcaatatgttcgagaaacaggcccctgaccctaaaaattttgatgaacgagctagaaaaaa atatatgtttataatgcggtaattaatttgtcatctctctatgaatagaaatatcaagccctgttaggggcgaaaaagtc cactatcaatcttcaccaccttagttagagaactggcatgaattcgtcatttgtcgtttaccgatttcaggggcttactg gcaaacgtggtactgttggttctagagggattaaaggggatgaggtaggttgagaatttgagttcacgaaaagggatgga atgtgatgattttcggtgaatgtcttgttttacaattcaagggtgtgcctggaaaacgtggaattgtgggagacagaggg cccattggagaaaaggtacaaagaggtctcttgtctttcggtttagcatttggaaacgattcgccaaaatcctttgattt tgatttgatttttcgcggtcatgcagggagatccggggccttttggaagacaaggagtaatgggacctcgtggagtacag gtaatttaacgaacggtaaaaactgtcggctatatcattattattttcctatttcttagttgcgtatggttgacaagaca gccagcgatacgcccgagaggaattcaataattttctagtcatcct |
Protein
Protein ID | aug_v2a.04538.t1 |
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Definition | - |
>aug_v2a.04538.t1 PGGPGNPGNKGSHGKNGDAGPMGDVGPPGESGFVGLPGEDGLSGVRGMPGKPGEPGEMGDSGEGGPTGEQGPVGPIGSPG DAGQSGMRGDEGEVGRPGGSGPIGEKGRPGLGGVPGRRGLQGPPGKIGERGGKGFDGLNGPEGLSGFKGKRGRKGSRGEP GDLGDVGLSGSRGIAGDRGREGRPGMGGMAGLPGNGGGKGEDGIPGEQGGLGLTGKRGTVGSRGIKGDEGVPGKRGIVGD RGPIGEKGDPGPFGRQGVMGPRGVQVI* |