Gene
Gene Model ID | aug_v2a.04967 |
---|---|
Locus | scaf1831 : 92296 ... 99460 : + |
To GenomeBrowser | scaf1831:92296..99460 |
Genes list of scaffold | scaf1831 |
Manual annotation
Study field | Retrovirus |
---|---|
Gene name | Adi-Retrovirus-related 20-44 |
Description | DNA sequence of this gene model showed similarity with that of Adi-Retrovirus-related 20-1. This gene model contains Rapsyn_N, TPR_1, DUF2977 and TPR_2 domains. |
mRNA evidence |
Annotation by Blast2GO
Annotation | GO |
---|---|
tetratricopeptide repeat protein 28 | GO:0005856 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.04967.t1 | gi|586477645|ref|XP_006869359.1| | PREDICTED: tetratricopeptide repeat protein 28 [Chrysochloris asiatica] | 0.0 |
aug_v2a.04967.t1 | gi|466078019|ref|XP_004283848.1| | PREDICTED: tetratricopeptide repeat protein 28 [Orcinus orca] | 0.0 |
aug_v2a.04967.t1 | gi|504162850|ref|XP_004592007.1| | PREDICTED: tetratricopeptide repeat protein 28 [Ochotona princeps] | 0.0 |
Transcript
Transcript ID | aug_v2a.04967.t1 |
---|---|
Definition | - |
>aug_v2a.04967.t1 ccggattttcccatctctacccacggccacaataacaattaggtgagtatttgtccttttgttttcaaagtgcaagtgca aaacctgttttaaaacagctttttagtggacaagaaagttgaaaaaacaaaagatttcttttcaaaacagatttttattg caatattacagtgcgccgctccttaccgtggccacccaacaaacatttttacaagtaagaagttagtcagtcaaggtacg cgaatttgattgacggacacgtctccttgcaaagttcgcaatcccccaaggccaaacgatgtgaacaacatgagtgaagt tgatacatggcttaaaagccttcccggaggtttgggcctggaaaaatgtagtagagtattagaacgccgtggatttctta cgctgagttcgttaaaataccttcgccctgggcaatattgatgcattcttgccgtccctggaaatattagtgaccctatg caacaggacggctggaagactcaggacggcagaatgacgaaacaatgtcgcgcaagactgtgcattcccaatcttacgcg acattttttcatcattttgccgtcctgagccttccagccgtcctgttgtgtaagctccctattgttcttggcagagaaac tcatctttgaaagcgaaatcaaggggaccactggaactttctcagaggttcaatacttatagggatacttggaagaacta ttatgcttgcaacactgcgaagcgttcaattgccggcgatcaggagattaaaccactagatagaaagagggatgaaatga agcaaaatttactcgttcttcatgtgaccttaatcaccacatctaaatacgtgtgaatattgttttcaccaaataaagga attcttgcggagatgtcaaatgttagtgatagaagagaccgaaattgccatatggtatttctttgatatcagcagctaat tcaaataactatttccacaattgtggctacatataacaacaaaagcaatctttcgtgtcttttaaagctgtaaagctttt gcctctactttattagttaaaatcgacaagtttcgatttggtagttgcatgttgaaactttttatggaggcgtgtctctc aatcaaagtcgcgtaccctgattggctaacttgtaaaaaatgtttgttgggtggccactgtaaggggcgtcacactgtaa aatgaagaaattcttctttaaaacatcggttagtttactgcatttgcaaagcgcggcgtgtttgtgcgggtggaagtgaa aggatgataaaattgttttgaaatagtgaagaaaaaaatttttgccggctaagggtcagtccatgtattaaaaagctgtc actgaggtcttgaaaatgctgcgcgaggccacagaccgagggcagctttttcaagaccaatttcaatacctcgtaaagtg acttgtcaccaatctcttcacatcgctcgaagcataactcgtcaaataccttgtcaaataactcgtcacatggcttgcga gacgactctttacataactggtcaaataactcttcaaagaactcgtcaaagaattcgtaacataacttcacaaattcctt gtcaagtaactcgtcatataacttgtcgaataattataatcataattagttctggtttcgtggcaactagttaccaggtt gggatcaccttttcgagaaaagcaaactgcagcttgtcattacaacacttccatttatattttgaagtgaaaagcctcct agcttcatactttaaaggggctctgcaacgctgttttgccttacttcagaatgctaacatttgccttggattgctgacat caatggaaactcaaagataataatgaaatttgttcaccgaagaataaaaagtgcactaagatcttttaccactctctgtt gttgcagatattggttggcattgtgaaaaaaattaccctcaacttttccaggctctggaaccaccttttaggcaaaacca aaattgtaccatggattactcatccttcaaaagattgatttatggcttagtcctaaatattgaggccatgtatctggctg gagtaaaagtgagaaaaagagatttctcagttttggccagaaaacagcaaaagtgccacgtcagagctcatttaagttgc cattctaagaattttccagttcaaatagtgtagcacactattagactacaagtccacaactttccgcctcgtacgtttta taataatgatttatccgcataggacctcattggtcaacaaccatcacatgtgactgttataaactgaggaatcatgtcct gaattgatagatgactaatatgacaaatgattaaaaacagagaaatggacactgtaagatttgacgcaacacaggcagcg tgaaataagagagtgcatgaccaacgtattgtttaaattaaaagaactgatgaaatcagttttcactcaaacccttcaag agtattccccaacctcccacgtttggcatatcttagtttgtctcactaattcttcaattactccattaataacttttttt ctgtgattaacagtttgccaaaaaggaaatggatgaacaggccgaggaaggaagagaccttggcagtcaaaaattagatt tccactcactgggtgacttaaaaatacttgctaagtctcttgaaaaatttttaattaccagcattgaaaaaggtgatcga gccaaagagggaagcgcctatctatgtcttggtagtgtttacttttcactgcgtgacttccgaaaagccattgattatca tgaaaaacacttgaaactttcaatagcaatcggtgatcaggccggagaaagaggagcctatggaaatctcggaaatgctt atatgtcactaggtgacttccgaaaggccattgattatcatgaaaaagccttgaaaattgcaacagaaatcggtgatcag gtcgcagaaggagcaacctatagaaatcttggtagtgcttacttttcactgggtggcttcttaaaagctattaagtatta tgaaaaacacttgaaaattgcgatagatgtcggtgattgtgccggagaagcacgagcctatgaaaatctcggtacttctt acttttcactgggtggctttcgaaaagccgttgagtatcttgaaaaatccttgaaaattgcaatagaaatcggtaatcga gcccaagaaggaacagcctatggaaatctcggctgtgcttacagctcactgggtgacctccgaaaagccattgagtatca tgaaaaatccttgaaaattgcaatagagatcggtaatcaagccgaggaaggaagagcctatgaaaatctcggttctgctt acagctcagtgggtgacctccaaaagccattgagtatcatgaaaaacatttgaaaattgcaatagaaatcggtgaccggg cgggagaaggaggagcctatagaaatcttggtaatgcttacgactcactgggtgacttccgaaaagccattgagtatcag gaaaaaagcttgaaaattgcaatagaaatcggcaatcaggctggagaaggacgagcctataaaaagctctgtaacactta tattaatctgggtgacttggaaaaagccattgagtctggcgaaaaggcattgaaaattgcaatagaaatcggtgatcagg ctggagaaggagaagcctttggaagtcttggtaatgctcactattctctgggtgacttccgaaaagccattgagtaccat gaaaaagacttgaaaattgcaatcgaaatcggtgattgggacggagaattaaaagcctatggaannnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncg atcgggccgtagagggagcaacctatggaaatctcggtaatgcttacaggtcactgggtgacttccgaagagccattgag tatcataaaaagatttgaaaattgcaatagaaattggtgatcgggctggacaaggaaaacctatggaaatctcggtactg attacaactcactgggtgacttcggaaaagccattaagtattttgaagacgacttgaaaattgcaatagaaatcaatgat cgggccgaggaaggacgaggctatggatatctcggtaatgcatacacgtcactgggtgacttccaaaaagccattgagta tcatgaaaaagacttgaaaattgcaatagaaatcggttatcgggccggagaaggaaaagcctatggaaatctcggtaatg cttactatttactgggtgacttccgaaaagccattgattatcatgaaaaacacttgaaaatttcaatagaaatcggtgat cgggctggcgaaggaacggcttattacaatattggttatggatactctcggctgctacggtttaacattgcggtgagtaa ttttgtttcctctgttgatgtgactaatactttgagatctcgattgaagtctgaaggtagttggaaaatgaaatttcgtg atctgcatgagatgacgtatacttccttatggtggtcattgctaagaattggaaagatcaacgaggctttggttgctgct gatcagggacgagcgcagactttgtatgacaacttgttgactcaatatggactcgcttcaccctcattatgtgccacatc tgactccaaggagaaaacaattcgcctcttcacagagctttcttcacaaattatctttcttggaatagaagaacttcgga tcaacatttggtttttgagcaggggacagaaagttgcatttcgacaagggaagctagaggctgatatcacagagaaagat cccatacgcgccttactacaagcagctttgagaaaaatcggagctgaagttaaggtgagatgcgaagatcgcacatttgg tcgatcagacaatgaatgtccgtctagcaaagaagtgtgtgaagaggtgaaaaagtcatgcgagtcttcagagaatcctt tcaggccattttatgatgcagttattggtccaattgttgacttgcttgcatctcaattcgacgagttggtcattgtttct gaaggtgcgctgtgccttacgccatgggctgccgttgttgaatcgattaggattcgcacggtgccctctcttaccagtta tcagttgannnnnctccaaaccttggatggacttccgagttccctgaaaagaaagatttcattttgaaaatttccgatgt tcaaggggccaatcttcgagctcgtcttgttgtcttaagttgctgtcacagtggacgaggcagagtcttgaagggtgagg gtgtggtcggtatcgcacatgccttcttggcagctggtgctcgttctgtgttgatatccctgtgggcaatagacgacgaa gctaccatggtgttcatgaaaaacttctacgaacaactgaaggaagggaaaagcgccagcgctgctgttcaccaaacgat gaaatcccttcgtgaatctgagaggttttctgagatgaggtactgggctccattccaacttatcggagatgacgtcaaga ttgaattcgaggcggataataacgccagaaattagagaaataacattttttttgtgcctgtttttgttaacatagtatcc agcgtaagatgtttctttattacttccactattacttttttttta |
Protein
Protein ID | aug_v2a.04967.t1 |
---|---|
Definition | - |
>aug_v2a.04967.t1 MDEQAEEGRDLGSQKLDFHSLGDLKILAKSLEKFLITSIEKGDRAKEGSAYLCLGSVYFSLRDFRKAIDYHEKHLKLSIA IGDQAGERGAYGNLGNAYMSLGDFRKAIDYHEKALKIATEIGDQVAEGATYRNLGSAYFSLGGFLKAIKYYEKHLKIAID VGDCAGEARAYENLGTSYFSLGGFRKAVEYLEKSLKIAIEIGNRAQEGTAYGNLGCAYSSLGDLRKAIEYHEKSLKIAIE IEIGDRAGEGGAYRNLGNAYDSLGDFRKAIEYQEKSLKIAIEIGNQAGEGRAYKKLCNTYINLGDLEKAIESGEKALKIA IEIGDQAGEGEAFGSLGNAHYSLAIKYFEDDLKIAIEINDRAEEGRGYGYLGNAYTSLGDFQKAIEYHEKDLKIAIEIGY RAGEGKAYGNLGNAYYLLGDFRKAIDYHEKHLKISIEIGDRAGEGTAYYNIGYGYSRLLRFNIAVSNFVSSVDVTNTLRS RLKSEGSWKMKFRDLHEMTYTSLWWSLLRIGKINEALVAADQGRAQTLYDNLLTQYGLASPSLCATSDSKEKTIRLFTEL SSQIIFLGIEELRINIWFLSRGQKVAFRQGKLEADITEKDPIRALLQAALRKIGAEVKVRCEDRTFGRSDNECPSSKEVC EEVKKSCESSENPFRPFYDAVIGPIVDLLASQFDELVIVSEGANLRARLVVLSCCHSGRGRVLKGEGVVGIAHAFLAAGA RSVLISLWAIDDEATMVFMKNFYEQLKEGKSASAAVHQTMKSLRESERFSEMRYWAPFQLIGDDVKIEFEADNNARN* |