Gene
Gene Model ID | aug_v2a.05331 |
---|---|
Locus | scaf1956 : 28854 ... 30745 : - |
To GenomeBrowser | scaf1956:28854..30745 |
Genes list of scaffold | scaf1956 |
Manual annotation
Study field | Cytoskelton |
---|---|
Gene name | Actin Domain Containing Gene5 |
Study field | Flagellum |
---|---|
Gene name | Adi-actin7 |
Description | Named thus because a bi-directional best hit result was obtained by BLASTP searches. See Chlamydomonas actin (XP_001699068). Some of the exon(s) of this gene seems to be missing from the gene model. |
mRNA evidence |
Annotation by Blast2GO
Annotation | GO |
---|---|
cytoplasmic 1-like | GO:0005524 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.05331.t1 | gi|340368693|ref|XP_003382885.1| | PREDICTED: actin, cytoplasmic 1 [Amphimedon queenslandica] | 0.0 |
aug_v2a.05331.t1 | gi|720005876|ref|XP_010257796.1| | PREDICTED: actin-3-like [Nelumbo nucifera] | 0.0 |
aug_v2a.05331.t1 | gi|297720793|ref|NP_001172758.1| | Os01g0964400 [Oryza sativa Japonica Group] | 0.0 |
aug_v2a.05331.t1 | gi|573964264|ref|XP_006664254.1| | PREDICTED: actin-like [Oryza brachyantha] | 0.0 |
aug_v2a.05331.t1 | gi|593757115|ref|XP_007117375.1| | PREDICTED: actin, alpha skeletal muscle [Physeter catodon] | 0.0 |
Transcript
Transcript ID | aug_v2a.05331.t1 |
---|---|
Definition | - |
>aug_v2a.05331.t1 gaggtacaagtaagtttacagtgagacaaaagtgttcggatttcactatattacaaaatggccgatgatgatgttgctgc cttggtcgtggacaatggctccggtatgtgcaaagccggtttcgctggagatgatgctcctcgagcagtgtttccctcca tcgttggtcgtccaaggcatcagggtgtgatggttggtatgggtcagaaagactcgtacgtcggggatgaagctcagagc aaaaggggtattttgactctgaaatatcccatcgaacacggaatcgtaaccaactgggatgacatggagaaggtaagaca cggttgtattttgattcactaatgttgagccattttctaatacatttaatgaattaacagatctggcatcacaccttcta caatgagctccgtgtcgcgcccgaggaacacccagttctgcttacagaagctcctctcaacccaaaagcaaacagagaaa agatgacacaggtattattattatttgatgattatcctttttgaaccgagagaattatatttcagccggagttaaacggt ttccgtgatctctacaacgaagagggaggggccgtagggtgacattcttcgccagggttcgcaaagattcccttggtgaa ccatcatgttcaccctgctaatgtcctacaattcatttatacttaaattgtgtctgcattcgttcgcattttctacggct cgctgtagcaaactttttagctgatttagaataatcaataatgtgcacaggaactcaacatgagcagtcgatccctgttt atcagattttctcccgactttttctcataattagtgtttgtaagaaacttaactttgcaaaaccaacaggcagtcacttt aagctgaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatcacagcc ctggctcccccaacgatgaagatcaagatcattgccccacccgaacgtaaatactctgtgtggattggaggatccatctt ggcttcactgtctactttccaacagatgtggatctccaagcaggaatacgatgaatctggccccagcattgttcatcgca aatgtttctaaatttccacttgaactttgttcatctaataagaaaaaatgaacacctaatttcgagtccaaaacagacct aagacgaaatatcgcgcttcgaaaattctttattaaaaacaaaatacaaatttcttttctccattatgcttcttaattct atttttgtaggtgttgcagcgcagtatttcttaataaagatattgttgacag |
Protein
Protein ID | aug_v2a.05331.t1 |
---|---|
Definition | - |
>aug_v2a.05331.t1 MADDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIFSRLFLIISVSLAPPTMKIKIIAPPERKYSVWIGGSI LASLSTFQQMWISKQEYDESGPSIVHRKCF* |