Gene
Gene Model ID | aug_v2a.05594 |
---|---|
Locus | scaf2047 : 91823 ... 95895 : - |
To GenomeBrowser | scaf2047:91823..95895 |
Genes list of scaffold | scaf2047 |
Manual annotation
Annotation by Blast2GO
Annotation | GO |
---|---|
u6 snrna-associated sm-like protein lsm5 | GO:0003723 GO:0005681 GO:0005829 GO:0006397 GO:0008380 GO:0043928 GO:0046982 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.05594.t1 | gi|350539912|ref|NP_001232310.1| | U6 snRNA-associated Sm-like protein LSm5 [Taeniopygia guttata] | 0.0 |
aug_v2a.05594.t1 | gi|658909112|ref|XP_008394643.1| | PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Poecilia reticulata] | 0.0 |
aug_v2a.05594.t1 | gi|527246764|ref|XP_005141714.1| | PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Melopsittacus undulatus] | 1.4013e-45 |
aug_v2a.05594.t1 | gi|6912488|ref|NP_036454.1| | U6 snRNA-associated Sm-like protein LSm5 isoform a [Homo sapiens] | 2.8026e-45 |
aug_v2a.05594.t1 | gi|589915495|ref|XP_006971080.1| | PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Peromyscus maniculatus bairdii] | 2.8026e-45 |
Transcript
Transcript ID | aug_v2a.05594.t1 |
---|---|
Definition | - |
>aug_v2a.05594.t1 ctgtggtcagcgtccttactttcccaactatgtacgtgaaatatgactacttggaattcagaatggcggctgttcgaaat gaatctcagcttctcccacttggtaagttttcatctgttttagcgttgtaacctaagatctcgccttgaaattaaattta aatgctttcttttccaaggtttattccatcaatcgatcagatggaattaagcataggagccaggtcgtcgttgtcatgtt tggtcttaaaatgtaaaccattgacaatgacaatgacaatccaaaatatcttcctaaaagaattaattatgactaaaaac taaccaaattcgatgaatggtgattgctttgaaatggatgaatgaaaagcaaaacagcggtctgaacttggtctcagctt tcaacatgatgactatgaccttagctagtgtacttgagagaactcagccaaataatttgatcaaagacttgattcttcta ctggtgaaacttctcctggtggaggtaatttaaaatataacaaagataaaaatttgcatttataaaactattataaaatg aagtgcagtttattccttttccattttgtgttttgtcaaagaagagtttcagtttcagttttatctttcagttttatctt tattttaaagagggtatagacatgttaacccccaatggagttttctaacacatggccctctaggtcacgaaagacagcca cagcacagggatcaccctacacttatcgaatagtgcgtgggttctttaacgtcccacagaattatcaacattcaaggaat tgtgagaagggacctccggtttatcatccttatccgagaagactagaaagtctaaccaattgcagatgaaattacaaagg cagcactttctcctcagttatttaaagaccctgagtgttggtccggtcggagtcacgaactcacgacctccagcgccaca gcccggtgcacaaccaagtgagccaccggtttgcggttagagagatcaacaagaagcactctttgggtttatctttctgt aaaaaagctgaaccacagcatcatagtcaacaggcttttcttagtgaatgttcgtcagggccaagcctgactgtctttcc atggttatcaagagacttaacttggttgtgaacttattgcattgactgtatttattttacattattgcaaattatatttt ttaacgtttgctttttgtaatttagggggttcaaacgatatccccccctgcccttagatccagctgagtgatgtactgta ttgcgctggtcttgtagtttgtctcattattacaatagttgtaacttttggccattaattttgttccctgtgaaggtttt ttttttttgcatgatcttaattataccactactctttgctaccattatcaccaagggttggccatgctagattgtagaac aacactgtagctttaagagctaaactaatttcctttcactttttctttctgtctttttttgtttgtttttgttgtctgct ttgggtgcagtccccacccaccccaaagttctctatgggggagtaggtcagactactctgtttgcattcnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnggttgccaatactgttaaatagtgctcaatacacataagtgtagagctaaatcatagaa ttataattctataattataatgtataaactttagtgacttacatgacttatgttttgtcctttttttttctataacagaa ttaattgacaagtgcattggatctagaattcacattgttatgaaaagtgataaagaaattgttggtgtacttttgggttt tgatgactatgtcagtatccttgctatgaagttatgactgatttttcagctgagatcttttgcatatcatataaattcag aatgagatcctttctttgacaaaatcagtaatggttttgggcgaaagtgaaatttgaaactataatcttgtactcatttc ataaggctaggatctttttttgtttgcggttttcaacattatttattatgatgttgacagagaaggagaggaagagatgc aagtttagtgtctttgaaggaagagatagtcatacgtaaccttaaccttggtttttgcccaaatgtcttttgtacttgca cagtcatgccgccatcataataattatcattacaaaataaatgtatttaagttcttatcccccaaaaccatataaactct tgaaaacattttgcagttttctgacaactgtaaaatccagcaattcactgactatttggaaataactgaggggaaaacaa catttgccaatttttaatgaatatcacagaaattgaaagaaaaaaaaaggagagattacagtatatgcttttgggggacc ctgtaaagaaatttaaagacatttgtatggattttgaaccacaccttaaggttcataccttgatcactgttcaaaaagca tcaaacttggtcaaatgatccatgtcaatgtgatctttgatttggtggtgtcaaattatcgactgtttaaaattagaaac tcacgccagttccttgcgcaaccttgaaatgactaatacagtagttgttactgatcaaggatcataggttagggggctag aattgcaaaaagcagtcaggatttttcataacctataattatgtgcactaaattaaaaaatcctttaccacattagatct ttgccacatgaagtttccatgtttttctccttgattttttggttagacatagttttggaggatgttacagtattgtaagt atcatgttaactggaatgaatacacatattccaatctattttatcacttggtttatatcccaaaaaaattatttccgtgg aagtctatacttttcatcactggtactgtacataatgtgagtaggagacattagatgtcaaggctgtaatattgcttgtt gaaatttttttctttgaatttttagcagtttactacattttgtattcatttttgtcaaatgtaataatatatcatatcct ttgaggactacttttttaggacttagtattgcttgccaatgactgaatttaattgctagttgcatacatttataaatatg tataaaattcttttatttttgtttctccaaacagtgagaatacaccagagggtcgcagaatgactaaacttgaccagatc cttttaaatggcaacaacataacaatggtaaatccaatttagcaagtaacttgaagtgtttttagtgtaaatgcatggat gaagttaccattaattctaaaaatgaattaatgttgattcttgtttattattctgaattgccattgaattgcttaactga atgctacaaaatataccgtaaaattccgaaaataagcccctccatgtataagctagcccctgaaactcataacaccaaaa accatctgttaaaacatcccactgaatataagcccccaggggcttatacgtgaaaattaccctcaaatacaaaataaaca gtacaataacacaaaaaattatttgcctccaaccataagctagttcaatcaattttgtaatgcaaattatattatttccc ttcatatataagcccctcaaaaagagcctttgacaaatataagcccaggggcttattttcaacgttttacggtatttact aattaaattttttgtctgtaggggataatgcaattttagtggtaaagttacaagtcagaaatgagttgtgcttatgttaa tcatttaactttacaatttttatttttctttcagctgattcctggcggagagtatcctttattaaacctttaatgtaata cttcaactgtttttgcagtagtacagtattttccaaagagaatgcaaattctcacactgaaacatgcaaaccacaacaat ctggttatatcagtcattcatgtagctgaacataacttcatcagcttcattaaaaaataagtggatctcaaaaagagcca attattgcaaaaaaagtgagcaactgccaataatctgccagctattggttaacaataatttttagccaaccaa |
Protein
Protein ID | aug_v2a.05594.t1 |
---|---|
Definition | - |
>aug_v2a.05594.t1 MYVKYDYLEFRMAAVRNESQLLPLELIDKCIGSRIHIVMKSDKEIVGVLLGFDDYVNIVLEDVTVFENTPEGRRMTKLDQ ILLNGNNITMLIPGGEYPLLNL* |