Gene
Gene Model ID | aug_v2a.05911 |
---|---|
Locus | scaf2171 : 11826 ... 22613 : + |
To GenomeBrowser | scaf2171:11826..22613 |
Genes list of scaffold | scaf2171 |
Manual annotation
Study field | Retrovirus |
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Gene name | Adi-Retrovirus-related 47-2 |
Description | DNA sequence of this gene model showed similarity with that of Adi-Retrovirus-related 47-1. This gene model contains rve domain. |
mRNA evidence |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.05911.t1 | gi|339258158|ref|XP_003369265.1| | putative integrase core domain protein [Trichinella spiralis] | 0.0 |
aug_v2a.05911.t1 | gi|410929869|ref|XP_003978321.1| | 0.0 | |
aug_v2a.05911.t1 | gi|339257746|ref|XP_003369059.1| | putative integrase core domain protein [Trichinella spiralis] | 0.0 |
Transcript
Transcript ID | aug_v2a.05911.t1 |
---|---|
Definition | - |
>aug_v2a.05911.t1 cgaattctctgtgctgtacagttcatctgtgcgtctttttctactgtaccgtatacttgcataaaatgccaggaagaaat aggattctcatagaacacagagagcgaatagtccgtgcttttgaggatgaggcagaggattacttgttagtggcacacgc gttaggagtaaatcgttcgatggcgacaggaattgccgctcaatacattagagaagggcgtattagagaaataccacgcg gcggccgaaacaacgtgctagttgacgtcaaaatgaggcagcgcctggaagatagcatcaatgggaactgtgttgttaca ctaagccagataaatggagagttgaggcgaagacttcctgccaaacctctgattcatgaccggaccgctgctcaaagttt ggaaggaatgcagtttcgcgttaaactggttcgacccgttccagcagacagaaacagacgtgatgttttgcaaaaaggca agaatatggaaactggctcacgaaccatgccattatgcaccactgtgcggttacaacatgtggactgccaggagccacgg gagggcgaggcagggtgagtgtgcataaagacaactatgcggccagcaaggacggaacttgaccgtggtcctacaagtat cgccctttaacagcctagtgtttcattccgcctatatcggcggaatgaatgcaccccgctgttacgacctcttggcccag acgaggcaaaacctagaccccgacgaggaggttatcttatattttacgacggtgcgccagtatgtcgaaatcccgccatt cccgcggccaatactgagctggagactctcccggcctacagcccattccagaacagagtggagcatgcaaccggctcact gaagccagcgataaaaagagacgtatcgtggcccgaaataaaggcccgaatggacgacagctagagcggggatgagacgc ctaggtattcagataggagagatgcgaacccggttgctacccgatactcttcagcgctgcatagatgttataactgctgc taaggccaacaagtggtttaggttcatgcagacctatttgccacgctgtcttaatgcatgggaaggaaattgaaggctaa taacgtactttgcatttatctacaaagttcccttcatttgtttagaaattcatactgattatgtaacgtttttattcgaa aaaagatttttgcggaaagaatgtaaagaacactctattgtttgtataagcgcgctaatgattgtcaacaaagttgtatt agttgttcattgatgctattgactgtttagccatggtttaaaattctattgaataaattgttcattaaaatgaatgcccg atcatgcaaaagaatattcttttgatgttatttaatttacaatgcgcgcaaatgaaagttgtttgatgaatttgaatttc gcgagacgttaatgaaagtcttgcaacttaattgaatgtatacaattatgcagataccttgtggagggtgcatttcgcgc aattgaatgccgattggcgcaaatgaacgtatttcgcattattgtctgacttttagtgcaaatgatttcgtattataata gaaggactgaagaaatctgacattcattgtcatgaaatcacatttcaacacattacagtggtgatgagatacatgacaca gcaatttctctggctgcttcggacactgctaggaaatttcattcttcctttgtgagaccatacaccagacgccaatgtaa aaaaaaaacatgaaacttgtgccaggtaatgtattttacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaagaaaattaatacattttccaaaaaaaattatcaagtacaacttt cttcattcttaattccgacaaatttaattccagaaaagacattctaactaagttggagctaaaccaatcacctattaacc aaagtttaaacttaacctcaagaatgacactgacgtgtacagtcttacagcgtaaagcagacagtgaaaattgtttctca cagtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattatttaacatatttaatgtggttaaatattattttaatattct tgtttgaaatgaatagatgaaattgcaaccatttagatttaaatagattagctgcataaatgtcacctcatcaatgccta agctaacactgtcaagcgcaaagataaagaaaatggatgatgaaagcgcagcttaataaagaagcagcaaaataacaaag gcaactcgtagaagtggnnnnnnnnnnnnnnnnnnnnnncagttctacaatgtattttatccttcagctaaaaaaagcta tggtaaaccaaataaacatgtgacaaaattaaatgatattaatacctttctactttgaagattaatgagatgaatcacgg gtttaacccgcgcgctattttcaattcttttacatctgtttgccgattccctcaccgaaatccggggttgactgagaagg aacggacatcggaatacttttgagcttccctttttgatactttttaaagtttacatgtatattcacaataaattgtccct tgcgcatttatttctgcagatattgttcaattacggttctaaacaactgagttcgttgccggtacttggattttccacgc caaaattcactcgcttcattttgcgcgggcacgaagagtcagttttgttagcttgaatgaatttttggttttcacccacg tgaccttagtcctttacgaccgtcgttaaccgccattgtggagcccctcaaatcgtaaacagagaccgcgtagagagaga tgtgagtgagttgtagtgcgatggttctctgtataatacctggctatggagaaaaatctggaaaaaaggaaggtattaat ctatttcttatacctatcgttgttgataagaacggtgaaagttataaacagctaacagatcgccgaaacgcgtgtatttc acggataagccgagacgacacgaaatcgaaagacatcttgaaaagtgagagagtctgtggtagacaatttgtttctggga agcctgccttactctgggacagatacaacgttgactggaagccttacttaacctgggcaaaaaaggattactcaaaagag cccgatttgcaggcagggacggtgagagccgacagggcgaaaggtcgcgaccaagcgaggcaatcgcttcttgaacaaca acaacgctagcatgaggctgcacgcgagcgagcaactaagcgccgtaaacttaacgaaagtggccagcaggtctcgaaga ttgacttcgctgcatcatcaggggaagagagattggaaagcgaaagtatgacttccgaaattcccgatttccaggtgcaa gagctgccggaaaaagaggccaccacgcaaacagagagaccggaacagaacgaagcttgcaatcaaactgaagaatttga ctacatgtttaggcctgctggatatcaagcaccagaccaggagtttttcgactctgatgccaaagtaagattttacactg gactgccaagctacgaagtgctgatggttgcttttgagcatgtttcttcgcacgtctcaagacaaactcagaatatcatt catttccaggaattggttatggttctcattaaactgtgacttaatgttcttttacaagcccttccataccgactcgtggt gtctgttacaacagtttcaaggattttctcatactggatggttgttatggacgttaggctgaaattcatgatttcatggc cagaaagggaacagttatggcaaactatgccaatgtgcttccagtatgctcttggcaagaaggtaacagttgtgattgac tgctttgtagtgttcattgaacgtccatctaatttacttgcaagagctcagacattttcatcatataagcagcataacac tgtcaaggttctgatcggaatcactccctaaggaagcaattcctttgtgtcggagacttgggtactaggaaggacctctg acaagtacctgacagagaactgtgactttttagaatttttggtcccaggggaaatggtcatggctgacaggggctttaca atttctgacagtgttggcctcaagcaggcaaaattaactattcctgcatttaccaagaggaaatcacagcttgatccggt ggatgtagagctaacaagagggatagctaatgtgcacatccacgttgaacgtgtgataagcctactgcgcaaaaaatatg ccattctgcaaagcacccttcccaaagattacttgacttgcaatcggaaaggaccaccagaaactcaagtacctaccatt gaccgtattattagcgtttgctctgccctggtaaatttttgtcctccaatagtccctttcgattagttttctttttctag catatgaaaagcatgagtgtagtcagccaactgattctgattataaaaagtttacccaagaaatatttacaaaatggctg gacagtggaaatgatatgataagaggtaaaatgtgtctatcccagccacatcaaatgccattttggcattactgtccatg tttattaccactttttacttatctctgcagtacgcaccaaagaaattcaatgttgcaatgggaaatataatgtttagcct gttagttaaacccaaattctagattgagatatacttatcagatggtctgcattgactgccaaatcagctgatggatttat gccaccctttagattgctagaatataaatttgaggcaagaactttggtaccggaaaaattcaaatgtaaaccgctagaat ttaaatgttcggttgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgcgaacgtcctt aagtttgaatgtgagataacatcccactcattctgattagcaaaagtcttaagtattttgttaacctccttgatttttga agccagagaaagatcatcaggtctcgtcaatacacttgaaattgttacctttgtgtttggagactccgtttctacgaggt tgccaagatcaacaattctttctgctactttccttgggtttgaattcttgaggtcattagttcccacatgaaggattata tgttcagggtgccgtctaatcattggttgaatataatcaaacatgtcattgacagaagcttcagaagagttcactacggt tttgactcgcttaaagttggaaacccgccagctaccaaggggtctccagcaatgacgacaacaggtcgtttggcggtcgt ttgatctacgtcaggagcggaagcagactcgtgtcctcttgtattctcagctactcgctgttcctgcgccatttttagtt tgcttttcattttctttttcgtcgattgatttgacaccctagaactcggttccgcttgaaatctggaaggaactgtctgc cactgatctgctgaagactgagaattgtgtacaatcgtagatggtgttacatgctccgtggagagaattcttagggcttc taggacactagctccttcaaattctaggccttgaattttctcttcgtacatggaacactccatttatattcatcaatctc ttgcaacaaggctgtttgacaatgttcccctgaggattcaactttgatgtggataaagtttatcactgtccatagcttat gaaattcatttctaacggaccccgagtcaaacgttaaaagatcagtatcatttgaaccattcactggatcatttgcctca ttgacatctaggtagccattactttcctcaaagccactcaccgccgggacactactctcgttgttgtcctcaatagaaat ggcttcctcgctctcgttcttatccttcgacttcaaatgactaacaacctcctctagatggtttctaacgtcaatacaag cgcccccctgaatttgaaacgtccttgtattaggatgaaagttgaaagtcacattaggtaacttaaaatcggcacatgaa tcagtactcgatttaacaaatccgccgccatcacaatcatttcgcatcgcaaacttgacttcgataaaccttgaaagctc ttccacagaaccattccaaatgaatctcattttggccgggttaaaagacaaaaatcgtgcaaagtcggaggaacagtcaa cgtgcaacgggctggatgacaaaaagcttgagatatcacgtccgtccgccatactcgcttgcactgttcagcttttagga atatctaaaatccgacaagtgatattgaaacaagccgtgctacttcgtctatttctgatgctggtatttacatctctgga ctagtgaatcaccaaacagttccgattatgcttgatacaggtgcaaccgtgagtgtgttgagtgaggaattgtggaggaa gtgtggaggatattcaagccttttacccttggctggaactctaacagctgcgaatggcaaccaaattgaagttcaaggtc atgcagaggtggggcttcgcatagcagaatttgttatcctttggacagtgattgttgctcgcggattatcacatgactgt ctgcttggtacagactttttccaccagtacaagtgcaaaatttgctatgatacgggaacattcatgaccggctcgactga agttcctattcgttatcaaaaagttaaatcagtagtgtgtagggtggttttgcagtctgacactgagatcgaaccgggga cggagtgaattattggagaacggttggagagtggattcgaaagaaactctgggagcccggggataattgaaggaatgaga acggtgcgaataaacaaggagatctgtgtcaggcattcccttgtagttcccaaggatggagatgctcctgtacatgttgc taaccttaaagacacagcaatcaagctgtcaatttgtcacgtaattggattcaagcacccacttagtagtgtgaatggtg agaccacttcattcaagtgggtgtgaacgtatcacaggcctcccagcaaaagtgttcgaaccagactggggaaaccgaaa gcagaggaaaggaatgggaggagatgggctcggagagagatagtcacagtaagccgaatactcagtttgacaagtctgac attttagaaacccggcaagaacgtttcctgtcattgattgatcaactttcagatatttttgccgttgatagctctgattt gggaaagaccagtttgagtgaacacacaaatgacactggcacgtcccgaccaatcaaaaaacctcccaggcgtgcaccac cccatcagagggaaattattggccggcagctaggcgatttgttgaaacatgggagaattgagccctcacaagagtccttg gaatacccctgtggttctcgctcgtaagcatgatgggacatttcgcatgtgcgtagattatcgtaggttaaaccagtgca ctgtgcaggatgcacagccattgcctaggtcggatgatgtattggaagcagtaggtggggcacgttggttctcatgccta gatctcgcatcaggttattggcaaatgccagtagcagccaaagatcgactaaagactgcattttccactcacagtggcca gtttcaatggaaagtgatgccctttgtttggtttaccttgatgacattatcgtgtggtttgctacttttgatggacattt gcatcccgttcttcaagtttttgacagaattagaaaggccggactgaagttgaaacctgctgtcagttcttgaagaagag gtaactttcttgggacacgttgtgtcgagctagggcattgagactgacccagagaaaactagagctgtagacgagtggct gactcccgagaatttagttgaactgcagagttttcttggcattgcaagttattacaggcggttcattgctgatttttcca ttactgccgaacctctgtacagactaagcaagaaaggaataaggttcttgtggggccccgagcagaggagggcgtttgaa gagctgaagcaccgtctcacaagtgctctagtcctcgcctacaaagacttgtcatccggtgcagggacattcgtactgga cactgatgccagccagagacttggaatcggtgctgttctttatcaagtccagtccgatggaaccgagagggtagtggcct atggtagccgttctttaaatgaacacgaaaggaactattgtaccaggcgactagaaatgttagccctggttacatatgtg gaccattttcgctactacctggccgggtgcaaatttctattgcggactgatcaccactcattgaaatggctgatgtcatc cgagagccagaaggccagattgcacgatggctcaaacgacttcaagaatatgacttcgaggtggagcatcgacctggcaa gtcacattgcaacgtggatgcaatgtctcgaaagccggggcgtttccatggtgactatccatcttgcggccaaactgggc tattgtgaactaaggtttctacgttggcacacggccacgccaaagaggaacaggacgtaaatcttgggaatccgtggtct gccaatgctatctgtcaggctcaaaggaaagacccaggtaataggccagtactggagcagtatctgagggaaaggaagaa gccatctatgcatgaattacagtccttaagcagcacttcaagagcggtgtggactcagtgtgaacttatggaggttgtgg acggtgtgctttgcattcactctgagaagagtagttcaccacagaaacaccgtgttcttttgccagggagtcctatccag ccagaactcaaagagtgtcatgacgctttggcagggggtcaacttgggcgtgagaaaactctctagaaaatgaagattcg tttctggcgtccaaacctctacagaagcgtcaaggagtattgcaatgactgcctgacttgcgccaaaagcaaaccacgta ggaaacccaaggcaccgttacagcccatcccttccggatatcccatgcagcggctgcacatagacatagtgggaccacta ccgcgaaccaagcgggggagccgtttcatcccgactgtgcaatgtagctttactaaatgggcggaggcatatgcgatccc aaatcaaagggctactacctgtgctaaagttctcgttaagaactggatctgtaggttcggagttccagacagtatgcact cagatcaaggaagaaaatttgagtcaacagtgttccaggaaacgtgtatgttgttgggaatcaataagacaagatccaca gcttaccatcccgaaggaaatggacaggtccaaaatttgcatcggactatgaagagcatgcttaccgcaagggcagagga gcaacctggttcttgggacgagcagttagatttctgcatgatggcatatcgaagcagtgttcaagcgtcgaccggacatt ctccctttaaacttttattcgggcatgagatgcgaattcctttagatgtgatgatgggcaatgccgatgagagtgaatca acttacaccaagtttgttgttgaccttcgtgagaagttgatacaggcccaccaagatgtgagggaaaagctgaaagtagc ccagcgtcgttaaaaggatgcctttgacaagggtgttaggtataccgtgtaccagcctggtgacctagtcttgcgtttta gccctcaactaaagcctggcgaaccgaacaagtttcatcgtcaatgggggggtccttatgaaatcgtggaacgtgtttca gaagtaacctaccgagttcgaaggaggggtcgcccttccaagctttcatcagttgttcacttcaacaatttgaggctgta caaaagggcagccgatgttagccgtgaacatggaaaacccgcagacagtgttcaaaaccacgcagacaccattgggggtg ttggtggccaaacctcaatttctgacaacgaggagaatgttttcgaatcggaacgaaggggtgaccccgctccagcggag ggacctcaggagacagcagatgagtcttccctgcctggagattgcatcgaagaaagagctaaaagtttcctcgactcttc taaggaacaagagctcactgacaagtttagtgatacctctaacccttatctggctttgaggattctgaatcacatctgca gcaaacacttcgcccttcatgggtgcgaaagccacctaatcgttacggggattggttggtgaacagtgataactcggaca aattgttagtggaactcctccgtggtgtcgtcgttcttgagttattccacagttcggaaagacagaggatcacaaagctg aaacctaagctattaaagagagcccgagtccttagggaaaacttggaaaataaagtgtgaagcatctt |
Protein
Protein ID | aug_v2a.05911.t1 |
---|---|
Definition | - |
>aug_v2a.05911.t1 MPGRNRILIEHRERIVRAFEDEAEDYLLVAHALGVNRSMATGIAAQYIREGRIREIPRGGRNNVLVDVKMRQRLEDSING NCVVTLSQINGELRRRLPAKPLIHDRTAAQSLEGMQFRVKLVRPVPADRNRRDVLQKGKNMETGSRTMPLCTTVRLQHVD CQEPREGEAGYNVDWKPYLTWAKKDYSKEPDLQAGTVQELPEKEATTQTERPEQNEACNQTEEFDYMFRPAGYQAPDQEF FDSDAKAEIHDFMARKGTVMANYANVLPVCSWQEAYEKHECSQPTDSDYKKFTQEIFTKWLDSGNDMIRGATVSVLSEEL WRKCGGYSSLLPLAGTLTAANGNQIEVQGHAEASQQKCSNQTGETESRGKEWEEMGSERDSHSKPNTQFDKSDILETRQE RFLSLIDQLSDIFAVDSSDLGKTSLSEHTNDTGTSRPIKKPPRRAPPHQREIIGRQLGDLLKHGRIEPSQESLEYPCGSR SLSKKGIRFLWGPEQRRAFEELKHRLTSALVLAYKDLSSGAGTFVLDTDASQRLGIGAVLYQVQSDGTERVVAYGSRSLN EHERNYCTRRLEMLALVTYVDHFRYYLAGCKFLLRTDHHSLKWLMSSESQKARLHDGSNDFKNMTSRWSIDLASHIATWM QCLESRGVSMVTIHLAAKLGYCELRFLRWHTATPKRNRTSVKEYCNDCLTCAKSKPRRKPKAPLQPIPSGYPMQRLHIDI VGPLPRTKRGSRFIPTVQCSFTKWAEAYAIPNQRATTCAKVLVKNWICRFGVPDSMHSDQGRKFESTVFQETCMLLGINK TRSTAYHPEGNGQVQNLHRTMKSMLTARAEEQPGSWDEQLDFCMMAYRSSVQASTGHSPFKLLFGHEMRIPLDVMMGNAD ESESTYTKFVVDLREKLIQAHQDPGDLVLRFSPQLKPGEPNKFHRQWGGPYEIVERVSEVTYRVRRRGRPSKLSSVVHFN NLRLYKRAADVSREHGKPADSVQNHADTIGGVGGQTSISDNEENVFESERRGDPAPAEGPQETADESSLPGDCIEERAKS FLDSSKEQELTDKFSDTSNPYLALRILNHICSKHFALHGCESHLIVTGIGW* |