Gene
Gene Model ID | aug_v2a.06046 |
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Locus | scaf2223 : 40156 ... 44407 : + |
To GenomeBrowser | scaf2223:40156..44407 |
Genes list of scaffold | scaf2223 |
Manual annotation
Study field | Retrovirus |
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Gene name | Adi-Retrovirus-related 1-2 |
Description | DNA sequence of this gene model showed similarity with that of Adi-Retrovirus-related 1-1. This gene model contains RVP, RVT_1 and rve domain. |
mRNA evidence |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.06046.t1 | gi|688611055|ref|XP_005165709.2| | PREDICTED: uncharacterized protein LOC101883482 [Danio rerio] | 0.0 |
Transcript
Transcript ID | aug_v2a.06046.t1 |
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Definition | - |
>aug_v2a.06046.t1 taagtgtggcagtctgaaccatttcatccgtaattgtcctcaccaagttaatcatgaccaggaaaactggagacgggcgg ggcgcagccagaagtgatcccgcccgataaatctaaaggtgcatttatgccgtgtcgtgtgaatggtgtcctgtcctatg ctttactggacactggtgcagaagcagcaattatcagtgatgacatttatcatcgttttaacactaatgcaagtaagctt gaacccccacgaaagcctgttcttggggccaataacttgccgcttgatgttgttggtgacacagagttgacccttaagct tggtagtatcaaagcgcaacataaggtgctagtatgtcgcgggttaccacaacaagtgttgattggcatagattttctca tgactcacaagtgtattattaactttgacaataacactgtatacaatgaagtaaatagcatggtgtttggtccccttgat aaagtttacaggatcaccgtcgctgaaaccgtaacattatcaccaaatatggttgctgatatatcttgtgtgattgaggg ggtgagtggtcataaggaatgtgtgggtgtggttgaaccgggaagtaagttctcagaaagatattctgttggaggcttgc ggactgcagtaactgtaaaagatgggcgaataccagttcgtgtgtttaattgcctcaataagcctctgaaaatttatcgc tgcagcagtgttggagacctccacccactagtggatggatttgatctacctgataaaggtgcgagtgagggttacaaagt tgtaaagggtgctaaagaacatgtcaaggtagagttgggggctaggcagtgtagcgcagtttttgtggaaaactctgagg ctgataatgttcctttcgaagaaatgtttcctataagcagtgattcagttccggaagaggaaaaacgtaagcactatgag gttctatccacctatgctgactgcatttcaagggggccatgggatttaggctcagcaaaaggtgtgaaacatatcattga cactggatcagcacggccaatacaggtacctcctagaagagtcccttttcataaaaggcaagaaatgcgccgccaagtgg aggaaatgcttgaagcacagatcatagagccttccgaatccccgtggtcctctcctgtggttttggttgccaagcctgac ggcactcaacactcctgtgtggacgatcgggctctgaacaaggtaaccaagcgagacatgtatccacttccacggtgtga tgacatattggagagcgtagctggtgcacagtggttttctcaccttgatctgctccgtggatattggcaaatcgatgttg tggaagaagatcgggagaaaacagcctttgcaaccccggacggtctttaccaattccgcaacttaagttttggccttact aatgcaccagcatgtttcatgagggccatgcatcttgtcttaaaaggcttgtgctggtcagactgtctagtgtatctaga tgacatcattgtctttggccgaaccctaaaggagcatagagagagactgtcactggttttgtcgcgtttgtctgaagcag acctgaagattaaccctaagaaatgcaaactcttgtcagaacgagtaattgtgctcggtcatgtggtgacccgggatggc atttctactgatccagagaaagtgagagtcattaaagagtggccagtgccagggaacgaaagccaactgaaggcattctt gggaacagccagttactaccgacaatttgtgccaaactatgctaccattgctgcccctttacaccgtgcttctcaaaagg gcgaacgttttagatggacggtgcagtgtgaagaagcctttgcgagcattaagcggaagctgacgaatgcccccatcctt gcttttcctcagttggacgagccatttattttagacactgatgccagcgacaggggcttagtagcagtgttatctcaggt tcagggtgggaacgagcgcgttttagcttatgcggcacgtgcactttctaaggccgagggaaactacagcacgacccgga aggaactcttagcccttgtctggggagcagaacactttgagacatatctttacggcagacgatttcttgctaggactgac catagtgctctgcagtggctacagaatttcaagaaccctaggggtcaggttgcccgctggctagagagactgagtggttt cgactttgaggttgaacatcgctctggacaatcgcatggaaatgcagatggactctcgcgtttgacatgggaaagtatca attccgctgaacaagatgaggatgccgtgttgatcaactccgtcaacgtagagccgctgtcaagcgaaagtataaaggta gccctgaaacaggatcctattctgtcgcaggtggtagattggcttaaaaccggcgtgaaacctgcgagatgtgatgtgga aggaggtgggcgcaaacttctgtcatactggtctcagtggggaagactgctactaagggatggcctggcattgaaacgct gggaaaacgaaaagacaggccaagagatctaccaacagattcgtctgccagaaagctttgtgcctcaagtgttgcatgtc cttcataatagcccttcagccggtcacattggtgttgcaaaaactttgaagaaggtgcgaaggagattttattggcatgg catgcgtgaggatgttgaaaatcacatcagaaggtgcggtccttgtgctcaagttaatgacgcaagcaagttgcctagag cacctcttatcaacatcaagtcgggtcaccccttgcaaagaggtgctatagacattgttgcacctacgccaaggtcaagc cttggtcacgagtggctgctggtggtctctgaccacttctctaaatttgcgcaagcttttccagtaaggaacacatcagc tgtaacacttgctaagaaagtgatggacgagtacatatgtcgatgtggctgttttgagagcttacattctgatcagggag ccaatgttgatggagctgtcttcaagggactgtgtgatttaattgatgcagcaaacactcgaacgactccatatcatcct cagggggatggacaagtggagaggctaaacaaatcactggtgaagattttgtgcaaattgatttctgaccatcgccggga ctgggccgactttgtgccaaaagcggttcttgcgtacaatagcagtgtgcacgagtcaactgggtttaccccttaccgtc taatgtttggccgggaagctattttgcctcttgacgcagtcctgaagcttgagacgtcaccgccccagagaggggtgcag tgttatcctgattatgttgttcagcagaagaagcaactggaggaaacagagcaccttgtgagagagaacctcaagcgggc gcagaaaactcagaaagcttactacgacaccaggtgccatggtcaacggtttcatgtaggagaccgagtgtggtatccta atcgagctaggacagggaggaagaaattcattaagccctggtgtggtccttggaagattgtgaaagccctgtctgatgtt acctatcgtattgaagaggacacgaggaaagcggggcagcgacgcaacagagaggtggtccatttcaattacctgaaacc atgttttacaccgccgccagtccatgagaaacgtccccaagcaaacacttccggagaagcggctcgatcagagccgagag atgtgccacagccaacccaggcaggggctgatgattctggcggggtcgaattggaatggctggaagatcctgttgttctg accacagatgaccatgtaacgcctcgagttgagggagcaagtgctaccctcgatccggatgcacaatcctcagaagttcc tgacccgccggaggttccttcagtaaacaatgaatcaagtcaaattcctgttagaccgagacgcgaacgaagggagccct cgtggctccgggacaatgttagaacagttgttgtttatcctaagtggccttttacccttgttggaacaattgcttattga cttttcgataacttaagctctaacctctgcccttatttgggagggggtagtttagcgtagggcctgagcccgactaagtt cggacacgcgctgtggctcagtgtacaacgtgctagtagtagagttgcaagttgcgttcgtgtctgatgacagataaagc gtttttgagaat |
Protein
Protein ID | aug_v2a.06046.t1 |
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Definition | - |
>aug_v2a.06046.t1 MPCRVNGVLSYALLDTGAEAAIISDDIYHRFNTNASKLEPPRKPVLGANNLPLDVVGDTELTLKLGSIKAQHKVLVCRGL PQQVLIGIDFLMTHKCIINFDNNTVYNEVNSMVFGPLDKVYRITVAETVTLSPNMVADISCVIEGVSGHKECVGVVEPGS KFSERYSVGGLRTAVTVKDGRIPVRVFNCLNKPLKIYRCSSVGDLHPLVDGFDLPDKGASEGYKVVKGAKEHVKVELGAR QCSAVFVENSEADNVPFEEMFPISSDSVPEEEKRKHYEVLSTYADCISRGPWDLGSAKGVKHIIDTGSARPIQVPPRRVP FHKRQEMRRQVEEMLEAQIIEPSESPWSSPVVLVAKPDGTQHSCVDDRALNKVTKRDMYPLPRCDDILESVAGAQWFSHL DLLRGYWQIDVVEEDREKTAFATPDGLYQFRNLSFGLTNAPACFMRAMHLVLKGLCWSDCLVYLDDIIVFGRTLKEHRER LSLVLSRLSEADLKINPKKCKLLSERVIVLGHVVTRDGISTDPEKVRVIKEWPVPGNESQLKAFLGTASYYRQFVPNYAT IAAPLHRASQKGERFRWTVQCEEAFASIKRKLTNAPILAFPQLDEPFILDTDASDRGLVAVLSQVQGGNERVLAYAARAL SKAEGNYSTTRKELLALVWGAEHFETYLYGRRFLARTDHSALQWLQNFKNPRGQVARWLERLSGFDFEVEHRSGQSHGNA DGLSRLTWESINSAEQDEDAVLINSVNVEPLSSESIKVALKQDPILSQVVDWLKTGVKPARCDVEGGGRKLLSYWSQWGR LLLRDGLALKRWENEKTGQEIYQQIRLPESFVPQVLHVLHNSPSAGHIGVAKTLKKVRRRFYWHGMREDVENHIRRCGPC AQVNDASKLPRAPLINIKSGHPLQRGAIDIVAPTPRSSLGHEWLLVVSDHFSKFAQAFPVRNTSAVTLAKKVMDEYICRC GCFESLHSDQGANVDGAVFKGLCDLIDAANTRTTPYHPQGDGQVERLNKSLVKILCKLISDHRRDWADFVPKAVLAYNSS VHESTGFTPYRLMFGREAILPLDAVLKLETSPPQRGVQCYPDYVVQQKKQLEETEHLVRENLKRAQKTQKAYYDTRCHGQ RFHVGDRVWYPNRARTGRKKFIKPWCGPWKIVKALSDVTYRIEEDTRKAGQRRNREVVHFNYLKPCFTPPPVHEKRPQAN TSGEAARSEPRDVPQPTQAGADDSGGVELEWLEDPVVLTTDDHVTPRVEGASATLDPDAQSSEVPDPPEVPSVNNESSQI PVRPRRERREPSWLRDNVRTVVVYPKWPFTLVGTIAY* |