Gene
Gene Model ID | aug_v2a.09818 |
---|---|
Locus | scaf3764 : 44782 ... 54642 : - |
To GenomeBrowser | scaf3764:44782..54642 |
Genes list of scaffold | scaf3764 |
Manual annotation
Study field | Collagen |
---|---|
Gene name | Collagen Domain Containing Protein20 |
Annotation by Blast2GO
Annotation | GO |
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triple helix repeat-containing collagen | GO:0044699 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.09818.t1 | gi|426352697|ref|XP_004043846.1| | PREDICTED: collagen alpha-2(XI) chain isoform 1 [Gorilla gorilla gorilla] | 6.0e-24 |
aug_v2a.09818.t1 | gi|426352701|ref|XP_004043848.1| | PREDICTED: collagen alpha-2(XI) chain isoform 3 [Gorilla gorilla gorilla] | 7.0e-24 |
aug_v2a.09818.t1 | gi|426352699|ref|XP_004043847.1| | PREDICTED: collagen alpha-2(XI) chain isoform 2 [Gorilla gorilla gorilla] | 9.0e-24 |
Transcript
Transcript ID | aug_v2a.09818.t1 |
---|---|
Definition | - |
>aug_v2a.09818.t1 ggagacgtaggatccgttggaaggcgtggcaagaatggtgctgatggggctcaggttggtgaagtcaattgagtggaggc ttttcgttgttaaagaagaaattaaacacaaaaattttggtttcaagcaagctgaaaggggattacaaagtttccagcgg taatccttcgtcagaggggaggttttcagttgaggcttcatcgcctttttcctgttgtgtaaagcgaaacaaaacgtaaa caaagcacttggctgttgatggttcatagccgtttgaaatgaaacgtatacctattttgatgtttgttatttacccttct agggtgctaacggggagcaaggaggccaaggtaccccaggggaagacggtgccaaggtaaggaattcacttctatgttaa aaaatgctgaagctgttgttcgttgttttgtatcgaggatgaaaagaatttgtccatagtttacgtttcatttccaacac aactcggcttcaattttttagggttcaaaatacgaaagtatttgtgaggatcagaggtggtatattcgtcctttttcttg tcatgtgtgaactcgtagcattcgtatgtcggaaagtgacaaaatatctgcatcagtgagcaagaatttaggatgcgaca aaaagatgcgaacaaatttcattattagctacaacaatgattttctgttaatcatttttttagggagaaattggagacgt aggaattgctgggcaacctggagaaaatggcaacttggtaaacactcgtataacatccaatttttaggtctgatgtcaaa atatatgaaacgttttgtttcttttaactctggaagctaacgaaacaatattctgagtgagaagtatctctcggagtaag gaggtaagtgcggagcagaaacgcctctgggagacaactgaagatatcgcttttgaacaggatagtttaagaactgattt taggagtgaatcattgagtgagttaatctgtcattaagaaagtgagaatatataacttcaccaatcgtaattcgttttct ttttcatgaatcgtttagggtccacaaggcgattcagggccgatgggccaagctggctatttaggtggaactgtaagttt tatcagtgtctcatcagttattgtttctttcatgcctagtttattggcttctatgtttttgtttccgtcttcgaatttgc aaataacttacgcgctatatcgtctctcactttggaaatattcagggtctttccgggcctcccggtccaccaggaagcgt tggtccttctggccaaaaggtgagttaactttgcaggtaatttaagacactagcgagacattccttgaacgcaaaggctg accttttgacgtaaataaatttcggttattagttgttcagagtccctgttttagagccgtttcnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnttcctcaacgttccgctgattcatgcagttttttttttaaagatccgtacct ctaacataaaatagagcgatgtaacgggcgcatggacttctcgccttttatttatatttgtttggcgaatgtaaaaaaat tatcttctcgagagtatgatttaatttgagggagattaccttgaaacccaaaatggaccaccttgatggcaggaaggaaa aatgaacactctgcaatattagaaacttaaaatttttaaagcgcaaatttttgtttggttgatgatattatatttttaac tttctttgttgcaggggctgtctggacaacctggcttccgcggagacgcgggagctggcggtagtcaggtaaggaaagat ttttaacaaatcttattaaaattgaattgacgaaaaggactttagtacttagtagttgctaaaataggattacgttgtgt tcgagctctctccttatggctagtcgccgtcttaaggaatatttggttattttgtgatatttaacagagaaacttggtta aagtgaagaagagggaaattcagtgatgcaaacggagattagcgtggttttcaaatgactatcgaaaaaccagtaccaat tgaaagtaattgctctgaccaatcacaacaggagcaaacagcaacatgagccaatcagaattcgtggcaattacctgtaa cttgcacaaagcgcggtaaaaattgcgcattcaagatgcgactgattttgattttgcttctcattggttgaaaaactcgt gcaagatttgttaagccaatcactaagcaatcacaaacgcgtgattactttcgacagtcatttgaaaactgttataaata atacctacagctcagttgcaagaagtgtttcacctttctttccctttttttttctttgctagggtccagtgggacaagct gggtctccaggacctcaaggaatcccaggaacaagagtgggtagaatgtgataaaatgataatcaaaatactgcgttatt tgacccgctcctgtactattctgttttccacacgactagggaagcatttcgactttcttcttctttgctttatccccaaa caccgccttacttttttcatacccctcactccgctttacacccaatttagttggttgacaggattttcgaagaaatgacg tcatttcgtgggtttctgtaagtgcagttagcaaacaaccagtcgataaatagatatcgcgccacgaactcggcaaatct agattaggtacaaactacccagggcgtgctttccaactgcaagcgacattcctgtttccccgtcaaagtaataattatta cactttattctaaagttttaggctgaagccagttaaaaacttagttcacctgacttacaaagtgttgcattttcttgtgt gcagggaggcattggtcccactggacccaaggggcccaagggagctgcaggatcgaaggtctgtgattctactaataagt gtttcaaagttaatgagtatttatgtaatctgtgttccacgagctatgatcctgtttgaaaagtaagttcctgtcatccc aatcgtgcgaaggcaagggtgtcacctttctacacttccctttgcaggaccgggtattggcgtcttactttgcaggactg attcgccacctatctaaaacagaatttgatgagaaattaaagcgctctcccccacctaaaattaatcatgaatcaacgtc cttggctctgcccccctttttctttcattggcggagggagtggtcgtcatttttcgtttgagatgtgtaaggttgaagcg cagatcattttgacgagtggaagagcgtgcaaactccgtatagggaagtcataggtttacgttattcatagcattcggag tcttccgaaaatgcttgaatcgttatcgataattaatgcatctgttctaaaagtgtttttcaagtgnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnctctccctcctcatagggtgagatgggagagagcgggcctggtggnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcttgc tgagagtatgtcttaaacattcggtaccctttggtggaataactcatcgactgacgagaaaaaccaacttccgctgacgt tgcatgaatgttttctaaacatttggcacttttacatttgaatttagatgaccaaacatgttattaattcagacgttttt tgtgtaatctacctgccatttgacctcaacctgccatttgccatcagtttcaatggtgtctaccctaagtcatgtgttcg atttctgagcgaaagcttgttgttttctcttcaattagcctcgaaattagcatggaaaaattgaacacaataaagcatgt atttgtggagaaatgagtctttcaaaattggaaatttgaatgggcgtatccaggagccgatgagtaggagcatacaactg cattctattcctgtcacagcgtttttatagcccaatttatttttagatcgaatttccttagaacgagactcccgcggaag tgccatgaccaatcatgtcactggaccggaactgcctttcgttcacaaaagcaaaggcttacataaaaatgccgtgacac tagcttagtaggggagttgtatgctcttactcatcggctcctggcttatcaccagttttaccttcataaaaattttgctc aatttcattcaaaatatttcggtcgttaccaaagcggacggtcataaattggaaaggtcactgcgtctgtgagaaaactc atgtgctcctgacaccaaatttaaatgaagacattggtagaaactcgcatatccagtaatttcctttgtctttttcacag ggtgaacttggcagcatggggaaacaaggtctcccgggtaacccaggagctgcaggtccagtggggccgaaaggggcgca gggtcaaaacggagcagacggtgatgacgtaagtcgaaagatctagaaatttccaacaggaggtgtaagtgatcactagt ttgtcacagattggagtttcttagatttgcacaactcagccctggcgggtttttaatttttagacactaagagtactcat gtattcgctatttttttcgcttttttgcgctttacttatagggtaaacctggtgtagatggaccgcgaggaattgaagga ggtcttggacgaactgtgagtctgccagaacttaaaaacgctgtgtgtaagcagcaatgaagtgactccttctttgttgt gtaatatttttcaaagggtgacgcaggagaaccaggggggaagggagctgttggcgaaattggcccaaaggtacgtacga atgtcttctttgcctttgcttcacaagaagtcttcttcaaagggtaataagcttgcatgaaaatacacaagtcgtttttt atttggatggttcaatgaagattgtgaccaatctaaaaatagctcgctctttgaaaacgctgttacgggctcaaggttgc aattgaaactctcctggctatgggcttccacgcttctttcattgttttttcttcgttctttcttctttgcaatgtttgtt tgttcgtgatgtactactgtctttagggtgaccgaggagtatctggagatcaaggcccaccaggattcctgggaccaaag gtatcgtgtctgattgagttataacagattaaaagaatcagtgacttcagattcggctccaacattcccttcgtatcaat aaatgacttctttttttaccagggacagcctggaagtgctggtcgtaggggtggcttagggatggaaggttcacaggtaa aattatcagtttggtattgaatagaaaaaaaaggacccagtgttttgtagtttcttttggattgttgtatctcagaggat tccctctggcgaatggcaaacgctagagagggtgccaaatgtttgcatatcttcgtgtgactggaacctgttcagatgca tacccaccttgtcgtcctatttgtctcctatgagttatcaactaaagatacaccgacaacaaaatgacttgttgctgttc ataatactaaatggaagaactaggagaccttaacgagtaatcaagtaaagagaataaacagacgtttgcaaatttgagtc caacctgataatctgtgccaaaaacttatttccttgtcacgccttgaaatagactggaccttgatttatctgtataggaa aatcttaagcgtggggctgatacagaccttcctctcagtctgtaacagctaagagtaaatattgaaaaactaaaaaggcc aagtttctattcttttccatagataagacagccagggaaatgtaaaatgctcatagaaaacacaaaagcgcgtattcatg acatggcgaccagtcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtctcagggagctgatg gcgagcgaggacgcgttggagagaccggagagcagggcgggatggtaaatattgtcattgggacatctgaaacttgggct gccgagcaacctggcctttgaatgaaaacgagattaacttggcctcgcctcgaaaaaactgttcttgagtcacaggccag cggtggtttacattaggaaaactaccaagtctaggcagcctcaccgttgtcattcaaaagtgtcgcgaagcaaacgaaag aaaaagtatttttgaaagatatcgctgtaataaatcgttgttaatatttttcttttcttcagggctctatcggaccgact ggcctttttggggcaaaggtaagcttgatttggttttggttttacaatattactaaaagtcctcgaaaattagggtaaaa gccactgagaaaccgtgtacagtcatcgtcggatcaattttttttgtttcattggtctgcaacatatatacacccgtgta cacccgtaattacaccaaataaacttgggaaactgcttttggtcagacgaannnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtaagtatctacgaaaaagcatggc ggacacaaaatacccaatgctgataccaacatggaaccaaatatgaattatttaagagtcatgaagtgtccacaatattg taacatttgaggtgcttgtggtcttgctagcaatgacgcgaaatgactaacgtttgacccgatctcgattgttaaattca aatgtggcttttttttttggttcgtgttttgttttgtttatttttttttaagtcatcggcaggtttaagtagttttggtg gagtcggtcaactgagtgattctccccgtgaacctcccgtcacagcagagaaagctggcaacatcaacttgtacaggagc gaacaaactgtaagtacagcaactgaaaacctgtcatcattgcttggttacgaaggggaggggacagtgcacaaagtata gtgggtagttaaatgacttaggaggggaagggatgatattttactggggtggcaagggatcgtaattgactcaggacctg gtcatggagtgacttagagtacaggtacttgaagctgtggcgtacttgcacaaaagagactgaatcctgtcaaaggaaac cgaaaacgtcatttttgccggatctcgccattagttctgtgcggtagaatcacaacttatctcccaagaatgagtttatt caataaattttttagtnnnnn |
Protein
Protein ID | aug_v2a.09818.t1 |
---|---|
Definition | - |
>aug_v2a.09818.t1 GDVGSVGRRGKNGADGAQGANGEQGGQGTPGEDGAKGEIGDVGIAGQPGENGNLGPQGDSGPMGQAGYLGGTGLSGPPGP PGSVGPSGQKGLSGQPGFRGDAGAGGSQGPVGQAGSPGPQGIPGTRGGIGPTGPKGPKGAAGSKGELGSMGKQGLPGNPG AAGPVGPKGAQGQNGADGDDGKPGVDGPRGIEGGLGRTGDAGEPGGKGAVGEIGPKGDRGVSGDQGPPGFLGPKGQPGSA GRRGGLGMEGSQGADGERGRVGETGEQGGMGSIGPTGLFGAKSSAGLSSFGGVGQLSDSPREPPVTAEKAGNINLYRSEQ TVSTATENLSSLLGYEGEGTVHKV* |