Gene
Gene Model ID | aug_v2a.10196 |
---|---|
Locus | scaf3908 : 88726 ... 92055 : - |
To GenomeBrowser | scaf3908:88726..92055 |
Genes list of scaffold | scaf3908 |
Manual annotation
Annotation by Blast2GO
Annotation | GO |
---|---|
low quality protein: protocadherin fat 1 | GO:0005488 GO:0007155 GO:0030054 GO:0042995 GO:0044763 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.10196.t1 | gi|156386258|ref|XP_001633830.1| | predicted protein [Nematostella vectensis] | 0.0 |
aug_v2a.10196.t1 | gi|345781801|ref|XP_532835.3| | PREDICTED: LOW QUALITY PROTEIN: protocadherin Fat 1 [Canis lupus familiaris] | 0.0 |
aug_v2a.10196.t1 | gi|471399711|ref|XP_004382835.1| | PREDICTED: protocadherin Fat 1 isoform X1 [Trichechus manatus latirostris] | 0.0 |
aug_v2a.10196.t1 | gi|471399714|ref|XP_004382836.1| | PREDICTED: protocadherin Fat 1 isoform X2 [Trichechus manatus latirostris] | 0.0 |
aug_v2a.10196.t1 | gi|297747350|ref|NP_001177099.1| | FAT tumor suppressor homolog 1 [Sus scrofa] | 0.0 |
Transcript
Transcript ID | aug_v2a.10196.t1 |
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Definition | - |
>aug_v2a.10196.t1 cttgactgggccaacgtggatgatggcaaatggcatcacgtgacagtctcgcgccaaggtaaccacgccaccttgatact tgatcatggacttcaccgagcctggaataagtctcccgggaaaatgaggatcctcaatctggacgagaaccccatctact tcggggcgaaagttgtgggctccaagaaacgagaacgaagcggtcgaggtaagatctctcaagagtaggtcaagtaagag tattcttatggccttgctcacaattgagtctatttttagaacactcgttcggtgaaattcagttgtcatggttgaagaga tccctgtaaaaatcattttgtgtaattatcaatgaatttgtcacagaacgataactgcatcacgcttgttttgactttcg tgagtggctaaggtgatggccctttgttttcgcgcggtacgtgtatccaaaaataaaccttactgggtcaaggcctttaa cttatagaggaacactcttacctaatttactcttgatctccttgacttatttcaatgtctttgaaacaattgaaatcgaa atggtgtcttttgttttcgtgaggaaacacaaggcagtcattaatttacttaattctctttcctcaggccaactagtaga gaacggattcaacggctgcctacagaacttgaaaatgaacgacgaagatctgccaacggatggctccaacagctatgtca ctgctaaaccaaataaggtatcgtctggctgtaggttgagcgtagccacgatcgtcaccgacaagtgcgcaagttcgcct tgccagaacggaggcagatgttctcctgatggagagaatggcttcaattgtacgtgcccagagggtgtcaagggtccaac ttgcgggcaggattcaagaccgtgttcgtctaatccgtgctcatttaacgccaagtgcacgaaccttggtaacgacttta agtgcgagtgcccagccggattatccggcaaaacgtgtgacgaaggatacgactgcactcgccaaccttgcaaaaacggc ggaacgtgtgaaaagaaaaaaggcgggaaacgggcctgttcctgtttgtcgactttcacaggccctgactgctctctgga cgtggacgagtgcgccagcgcgccttgcaaaaacggcggcgtctgtgacaatacatttggcggattcgtctgcaactgtt ctgaagtctcttacgtaggcacgttttgcgagaaaacctcacctactgtcgcgtatagaaaaggatggcctctgggtcaa actgaaatcataagtattgccgtagttatatcagtcttgttgcttgtcgtaattcttgttgtagtcatcctgcgatggcg tgccaagaaaaaacgacagcagcgcgcgcaagaagaagcagctaaaccaccctcggtattaaaagtgtccccacctgtgg tgggctccgacgtcggctcacctgaaccccccacccctccaccaagagaagttcatgggttcaacggcgaggacctggga ttgcctcctggttatgacgcagatgattcttggcgtaggcgccagagagctcgtgaagactttggcacaatgaaaacgct caattcaatatcagataataatctgcggagttatcattgggactacaccgatattcccgatgatttggtcccgaaaaaac ctccattgacacgggactcgggaagttacgacgggtctccgaaatgtgcgaggggaactatggatgtcacgcaacagcca aatggtttaaactgttcacagggatctcttgatgttccgcaagtccctaaaagaccacggaactatagggtctccgaatc tgacgatggttacggggagcctgtccctcatgtcccgaaaaagcccctccagtatctgaaccccaggggtaacgccgcct caagatattccatggattcgcgtcagtcggaactgtcggacgccaccgacttggaccccgatattttcaaagggcacttt ccccgtcctccaaaggagccgtatcccgaaagccttgaccagcacccggtgggttcgtacgctccaactttgacagcccg cgggtccgagctaggcagcatcactgacgggatgatgtccgaagacgatctcgagcaggtgtacctcggaaatcggatgg aagcttgcgacgattcacccgagaattcttatctacattcggaaaactgctccgaagatgaagacgacgaagtggtgagg aaattagctcagagcccggcgacgccagaccctgatttccacaaagcgctaagacgagaaatcaaacaactgatggatgg tctggaggagcttaaatttgaatctgaaatatgacgcagtggctcaaagtcaccacggagcaaaaaatagggaagcccgc aagtaatgctgcaattccccaaagtatacttcacttaaaaccaaggcaagtgtacttgtagcagcgacggctgaaaatcc gaactatttgagctcactacgtgaaaaacaaacaacttatacagtacttgtggaatttttatggagggtgctctcatagt gactagttggctaataggaagttcccttataactctgatccattccagtcatctttaggggtggctaccagttgagatta ttttgtactagaattagagcttcccagcattcactaggactgggaactttccattagccacccgatcttttaaacataag tcaaacttatgggcatatttttcttaaacaattacagatagtcatagttaggtttctttccaagaattctaatgttttgg ttcatgaaaaaaaaattaactcttcttatgggacattgtgggtcgaaacctgctccctgttccctcaaaaggaaaaaaga aatgatctcaattatgatctcatgctctaagaattttttatatttttttagagacgaagtcgcacatttttgataaaagg attgatccattattttttcagcgatttccttaagagctatttttaaggtaaattatttttacatttcctgttgaattttt acggcgaaaatcttttcattcagtttttgaactctctcttttcagtgtcgtttttacaataataatgtttgcaaaataca tatatagatatgtacagaaaaaaattaccgtttctttttgttttgtgaagttatttatcgaaatataatatacgcgttgg cttagcagttttcagtggtgcttgccaagagatgtaatttattttcatgcgcgcagtaaacaactgtatacagcttttga ctgttcaagtcaatttcggtatctttcgtaaagaaatttgtaaacctttt |
Protein
Protein ID | aug_v2a.10196.t1 |
---|---|
Definition | - |
>aug_v2a.10196.t1 MRILNLDENPIYFGAKVVGSKKRERSGRGQLVENGFNGCLQNLKMNDEDLPTDGSNSYVTAKPNKVSSGCRLSVATIVTD KCASSPCQNGGRCSPDGENGFNCTCPEGVKGPTCGQDSRPCSSNPCSFNAKCTNLGNDFKCECPAGLSGKTCDEGYDCTR QPCKNGGTCEKKKGGKRACSCLSTFTGPDCSLDVDECASAPCKNGGVCDNTFGGFVCNCSEVSYVGTFCEKTSPTVAYRK GWPLGQTEIISIAVVISVLLLVVILVVVILRWRAKKKRQQRAQEEAAKPPSVLKVSPPVVGSDVGSPEPPTPPPREVHGF NGEDLGLPPGYDADDSWRRRQRAREDFGTMKTLNSISDNNLRSYHWDYTDIPDDLVPKKPPLTRDSGSYDGSPKCARGTM DVTQQPNGLNCSQGSLDVPQVPKRPRNYRVSESDDGYGEPVPHVPKKPLQYLNPRGNAASRYSMDSRQSELSDATDLDPD IFKGHFPRPPKEPYPESLDQHPVGSYAPTLTARGSELGSITDGMMSEDDLEQVYLGNRMEACDDSPENSYLHSENCSEDE DDEVVRKLAQSPATPDPDFHKALRREIKQLMDGLEELKFESEI* |