Gene
Gene Model ID | aug_v2a.10500 |
---|---|
Locus | scaf4022 : 39215 ... 50015 : - |
To GenomeBrowser | scaf4022:39215..50015 |
Genes list of scaffold | scaf4022 |
Manual annotation
Study field | Retrovirus |
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Gene name | Adi-Retrovirus-related 1-7 |
Description | DNA sequence of this gene model showed similarity with that of Adi-Retrovirus-related 1. This gene model contains RVT_1 domain. |
mRNA evidence |
Annotation by Blast2GO
Annotation | GO |
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integrase core domain protein | GO:0005488 |
Transcript
Transcript ID | aug_v2a.10500.t1 |
---|---|
Definition | - |
>aug_v2a.10500.t1 gcgctcgaagaattgcaactccaagtagaggaaggagcttgtaagctcccaatctcggtttggaatcgaaggaatacaaa ggaaagagtaagcttgccatgtcgaaagttgtccttgctaaagtcgaggatgagcttggagaaacagaagacaagtttga atatctaatggcacttcaaaattttgttggtgggacaccgccgccacttgaaaaaatcgatcaaaacaaagaagctaaac aagaatcggtgaaaatgaaattggagtacgaagcgctgtgtaaacagttccaggaaattttggagtcgtacaggcagaaa atggagcaggcttcggtaaaactcgaacacacaaaaccttctacatcagcctcgacagcttcaaaaccaaaagaaggtaa cacagtgtcgctcgtagatgtaaaaactgcccttaggagagattttaagattatgggtgctattggaggagaggaacaaa aggaccgattgtccttcgtcagtttaattcggcaaatagatgccgggatggataaaggatgcaatgaacgtgaaataatt gatgcggttattcgtgctatcagccccagtttaaggctaagatcttatttagaaaccatgaaagagctcaccgtggcaaa actaagacagatgttacgagctcattacaagcagaagtcaggcactgaactttatcaagaacttacaaaaatgtgccact caccgaaggaaaatccccaagaatttttaattagagcccttgatctaaggcaacaggtcctcattgcatcacaagctgag gatggtactgtgaaatacgagccatcgctggttcaccccttgtttttgcatgctattgaaactggtcttcaggatgaagc tgtccgaaacaaactgcggccgttcctccagaaagcagaagtcacagacaaagagttgatggaacaaatctttgtggtcg tatcccaagagtcagaacggaaaggtaagcttggggcaacctatcacaaaatgccacagtgaattccttggaagttgaca gtgattaggctgagccgggtggttaaacacggtcaaagaagtctgcatcgaagaaagaaatgaagtgagataggccagac aggctgatggtcactttagaggcagtccaatcagatattgctgttttgaaagaagctatcgccccccagaatgccagtga atgagagagagtccaacacaggtacccattagaaaatcgaaggagacgtgtctgccaggcatacaagggagcaactcaag agttttgtaaccattgtttccgctgcagttcaagtgaccattttgcacggggatgtcgcagtggtgcagccagtgtacca aatcagggaaaccggaggaggctaccaccgcgggacagggtagctgatcaccaggtgaaaaggtcccatgtttgtgttaa ctgtggcaggaaaggagtattcctaaagcaatgttccaagtgtcagtctgtacattattgttctcagaaatgccaaaaga cccctgatgaagcataaacagttgtgcagcgcagttaagtacctgtctaaccaggagaaaggggacacttctgacagtgg catgtatgttagacaccttacaccaaatcaacacgccaaagttgcaaaattggtacgtggggaactgatgcatggttcag agtgttatgaacaatgtgcagacccaagctttgtgggacaccggtgcccaagtttctattgtttctagggactgcattgc tgagaacctgcccaaagctgagagtcgtcgaatggatgaactgcttaacgacaaaggacttgatctgacaccagctaagg gtactgaaattctatatgaaggatggattgaagtttccttcaaacttgcgacctcagatgacaaacatggtatgtcagtg cccttcctggtttcaaaggatgctctggatcatcccattgtcggatacaatgtaatcgaagaaattgtgaaaaaccctgt cagtgattcttcagacaatcatgaagagacactagtcaatgtcttgagcacaagccttccaagtgcaaagcaggaaaatg ttaaagccttggttgttctcatcaggaaaaacatctcaagttaactgtgtagagtaaaagtaacaaagaaggatgtggta attcaaaagaatgagacaatagtagtttcttgttttgtaagtactagcccaactgaatcaagacttccagtattgtttga aacagacgttgaatcaccttggccatcagggcttgagttccctgaaacaggggtggcacctcctcgcgtatcagaattca agtcaagaacaccacagcccaagaaattacattaaagaaaaggacaatgctaggcaagcttgaactagtcaaatctgtaa caccactggaagtaagaaagaaagagaatgaagaaaggtcagcagactgcagtcatcctgctcactactcatcagaggag ggagaagaagccagatcgcaatcagatacacctgccatgaagagatgtcaaagtgaagctagccattcaactccagatgt tgacttggaagatctgacagaagaccagaaaattgcagtggcgaccatgcttagagaggaagcagagtccttttcgaaag atgacgatgacgtacggtgcgctgaaaatctgcaactcaagatcaatttgtcagataatcgtccagtccagaaaaaaact atacgtctattccaaaacctctatactctgaagtgaagcaatatgttgaagacttactcaatcgtggatgggtgtggaag tcacgctcagcctattcatcaccagtggtttgtgtgcggaaaagggacggttctctgagactgtgcgtggattttcgtga gttgaacaggagaacagtacctgacaggcatccactccctcgggtacaaacaaccattgagaatcttggtgggaacaagt gattttctctcctggaccaaggaaacgcctaccatcaaggatttgttaaccctgaatgtcaacacatgactgcatttata acaccgtgggcatgtacgagtgggtgaggatcccatttggtctccggaatgccccaggagaattccaaagatttatggag gactgtctggacgggcttagggatgaaatttgttgaccttacttagacgatgtgactgtcttccgcagaacctttgatga gcacatcaaaaatgtacgaacagtgctgaggagactacgtgaacacggaataaagctgaaaaccagaaaatgcaagatgt tcaagaaggaggtcaactacctaggaagaattgtctctgctgatggatatcaggtggatctctcaaatgttagggcagtg ttggcactgaaggagattaatccaaagaccgttggtgatgtgaggaaactcctgggtttgtaaggatgttaccaaaagta catacgggacttctccagaattacctagcctcttttcaaactcttgaagaaacccttgtctaagaccaaccaacgtctta ctcaaacagagtcggagaggaaatggccaaaagcccaatccagtcatgctattgttatgctatactgtttcgacacagga agatcaaggagagttggaaaaacttcattactgtttggctaaccctccaattctcggttatccagattatcgtcttccat ttgttctacacactgatgcatccaatgaaggacttggagcagtcctttatcagcggcaatctggtaagatgcgggttata ggatatggatccaggaccctgaccaatgtagagaaaagttatcaccttcattcctgaaagttagagtttgaagtgggcca tctgtgagcagtttagaaactatctgtactatgcaccgtcattcatagtttacccggataacaaccctctgacatatgtt ttatcaacagcgaaacttaattcaacgggacatcgctgatttcgcaactagccgatttcaattttgagatcaagtacagg catagtaaagtgaataaggatgctgacactttgtccagacttcccttggacattaaccagtacatccctacctgtgcgca gggaacttcccaggatgtgatcagtgcagctctgtccggtgtaatggcacttcagaatggtgatgcagtgtggataaaag tagtcagtggtggaacggaggcattaaaccttgactcggatcttcttgattccagaaattaccacaaaatttagcctcaa gtcttcctggcagctcagaaacaagattctagtattggcagagtcctagcatgtagattgaatggccggaaaccaacaat atgcaaaattgctaacgaacttccgtatacaagaaagttgctgcctgaatggcctaaattggaaattggaagcgatgggc tgctacgaagaaggagtgggcagaatttacagctggtgttaccaaagcagtttcaccgcttggtctacaaggaactacat caagatatgggccacctcggaacagagagggtactacagctagcccgtgaacagttttactggccccatgtgcagagaga tatcactcactttgtaactcgggtgtgtcgttgcctgaagcaaaggcgaccaaatcttccaacacgtgtccctcttcatc ctattgtgagtaatgcaccgtttgaagtgatatctattgactacctacaccttgaaaaaagctctggtggacacgaatac attctggtaattgttgaccacttcacccgactcgcactggcgtatcccactcgaaaaaaattagctcgtacagcagccga ccggctctacaacgatttcatgcttcgattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtattcgctactttacttactatttggaagg tcaccactcctgccagtagatctaatatttggaccttcactaggggaagctggcgttactcacacagaatatgttgacaa gtggaagtttgctatgaaggaagcctattcactggccctaaagaacacctcaaagtctgtcactgatggcaaacaacagt gtgaccgcaaggtgagattttcaaagttgcaacccggggacagggtgctggtccgaaattgtctgagcgtggtggtccag cgaaactccaatcgtattgggagcaaaaaatacatgttgtaattgagcagagaggggatctaccgatctacaaggtgaac ccaggaggacaaccaggcaggtcgaaagtcatacacagaaatctcctattcccatgtgacttccttgccttccttaatta tttattggttccagcacaataaaggacaattcgctagctctttaaagcggacaacataggtcaaagtctactcgggttag caaaggcacgtaccgtgatagagaagcatcgagattaccgtggaagaaaattctgaacttatttaacaagaataaaagaa ttaagaggcatgtaagatctcatatcgtgcatagtgtaccacattcgtcagcgttgaaaaaatattttatcgtttgatta ccgtgtagttatcttaaaaccagactgtgtagatgtacaccagttggaatcactcgtgcaaaaggttcaaggttgtattt tgcaatttattttttcaaaacaagaactgcgaaatataaaaagacatctcaagtatcagttttctttcatgaggaatttg tacgttttgttcaatgtaattcaataaagtgtcagaaactaaatcacaagtattgtgtttcaagggcaaagttatttact tcaggtgatattgagttaactcataataataatccaaacaattttattgaattgttacaatctcgattagcacaacatgg cttgagaatattagacattggtggtgcaggtgattgtttctttagagcggtgtcccatcagttgtatggtgaacctagct atgacaggaatgttcatggtactggtattaaatatatgagaaataatccagaaagattcattgaaagtagtacagaccat tcatggttaaggtatttagcttgtttttcacagcagggtacaattgggctgatgcaattgtgatacaagcagttgctgat gcattaaacttgacaattcacatcatagagtctaatcccggatttgcatcggttactaatatcagtgcagttagatcaga aactgatgccactgctataactattggacatcttgatgaagtagactatgtttcaactgttccattcaatgaacaggcaa tggctttcaatgttatttgtaacaatcaaccaccacaggtagcaacgggttgctgtagtgtagcgtagggcctgtgcccg acttagttcggacatgcgctgtgactgagtgtacaacgtgctagtagtagatttggaagttgtgttcgtgtctgatgaca gataaagcgtttttgagaatagttgtctcctttgttgtgttacatttggtggaagcggtgggattgttaattatggaagc aactgtgaaagctttggagacgaaagtggcccagttggaagccaacctcgggaagaaaagcgaaacagcgtccagttcgc acggcgccatgagttcatcgatcgctttggcggatcattccctccgcattaaacccgaaaccttttcggctgcttcggga gaaaactggctcgtgtggttgcgaaaatttaaaaacatcgcttcgctgaataaatggacagccgagcttcaatgtcaaat cttgccagcttacctgaaaggcctcgccgagcaaacatacttcagtctcactgccgagcaaacatccacttgggagggtc ttcaacgtgcgttgacagatcgttttcatcccaaagaatcacgacaagtacacggttctaccctgcgggctaagttacgt cgacctgacgaggatttacatcaactgagatgcgaaatcgcccgccttgtcgagctggcctttcccgacgacccgctcgt tatacttgatcgtactgcgagagatttcttcattggcgccctaactcccctcgccttacgagagaaggtgctggattacg gcccgaataccctggatgaggcactggcggctgctctgcggtatgaatcgaatcaaacagtgttaagcaaagggagtgct cacgtcctttcttcaacgtccgaagagatggacgggaattctactttacgtcaagggactccagaaccccctgtatgggc tcagcagctctttgaacaacaggcagaaaatttagagaagctgaagaacattccccaaggaaggcaaggtaggaatgaca gtgtacagtatcctcagggccccagagcgtgctttaagtgtggcagtctgaaccatttcatccgtaattttcctcaccaa gttaatcatgaccagggaaactggagacgggcggggcgcagccagaagtaatcccgcccgataaatctaaaggtgcattt atgccgtgtcgtgtgaatgatgtcctgtcttatgctttactggagactggtgcagaagcaacaattatcagtgatgacat ttatcatcgtattaacactaatgcacgtaaaaacgtaagcactatgaggttctatccagctatgctgactgcatttcaag ggggccatgggatttaggctcagcaaaaggtgtgaaacataccattgacagtggatcagcacagccaatacaggtacctc ctagaagaatcccttttcataaaaggcaggaaatgcgccgccaagtggatgaaatgcttgaagcacagatcattgagcct tccgaatccccgtggtcccctcctgtggttttggttgccaagccagacggcagtcaacgcttctgtgtggactatcgagc tctgaacaaggtaaccaagcgagacttgtatccacttccacggtgtgatgacatattggagagcttagctggtgcacagt ggttttctcaccttgatctgctccgtggatattggcaaatcgatgttgtggaagaagatcgggagaaaacagcctttgca accccggacggtctttaccaattccgcaagttaagttttggccttactaatgcaccagcgtgtttcatgagggccataca tcttgtcttaaaaggcttgtgctggtcagactgtctagtgtatctagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnntcttcacggcagacgatttcttgctaggactgaccatagtgctctgcagtggctacagaatttcaagaaccct aagggtcaggttgcccgctggctagagagactgagtgatttcgactttgaggttgaacatcgctctggacaatcgcatgg aaatgcagatggactctcgcgtttgacatggaaaagtatcaattcctctgaacaagatgaggatgccgtgttgatcaact ccatgaacgtagagccgctgtcaagggaaagtataaaggtagccctgaaacaggatcctattctgtcgcaggtggtggat tggcttaaaaccggcgtgaaacctgcgagatgtgatgtggacggaagtgggtgcaaacttctgtcatactggtcacagtg ggggagactgctactaagggatggcctggtgttgagacgctgggaaaacgaaaagacaggccaagagatctaccaacaga tttgtttgccagaaagctttgtgcctcaagtgttgcatgtccttcataatagcccttcagctggtcacattggtgtgtca aaaactttggagaaggtgcgaaggagattttattggcatggcatgcgtgaggatgttgaaaatcacatcagaaggtgcgg tccttgtgctcaagttaatgacccaagcaagttgcttagagcacctcttatcaacatcaagtcgggtctccccttgcaaa gagttgctatagacattgttggacctacgccaaggtcaagccttgatcacgagtggctgctgctggtctctgaccacttc actaaatttgcgcaagcttttccagtaaggaacacatcagctgtaacacttgctaagaaagtgatggacgagtacatatg tcgatttggctgttttgagagcttacattctgatcagtgagccaatgttgatggagctgtcttcaagggactgtgtgatt taattgatgctgcaaaaactcgaacgactccatatcatcctcagggggatggacaagtggagaggctaaacaaatcactg gtgaagattttgtgcaaattgatttctgaccatcgtcgggactgggacgactttgtgccaaaagtggttcttgcgtacaa taccagtgtgcacgagtcaactggctttaccccttaccgtctaatgtttggccgggaagctattttgcctcttgacgtag tcctgaagcttgagacgtcaccgccccagagaggggtgcagagttatcctgattatgttgttcagcagaagaagcaactg gaggaaacagagcacctagtgagagagagcctcaagcgggcgcagagaacgcagaaagcttactacgacaccaggtgcaa tggtcaacggtttcatgtaggagaccgagtctggtatcgaaaccgagctagcacaggtagtaagaaattccagaagcctt ggtgtagtccttggacgattgtaaaagccctgtctgatgttacctatcgtattgaagaggagaaaaggaaagcggggcag cgacgcaagagaaaggtggtccatttcaattacctgaaaccatgttttacaccgccgccagtccatgagaaacgtcccca agcaaacacttccggagaagcggctcgatcagagccgagagatgtgctacagccaacccaggaaggtactgatgattcta gcggggtcgaattggaatggctggaagatcctgaccacagagggccaagtaacgcctcgggttcagggagcaagtgctac cctcgatccagatgcacaatcctcggaagttcctgacccaccggaggtcccttcagtaaacaatgaaccaagtcaaattc c |
Protein
Protein ID | aug_v2a.10500.t1 |
---|---|
Definition | - |
>aug_v2a.10500.t1 MSKVVLAKVEDELGETEDKFEYLMALQNFVGGTPPPLEKIDQNKEAKQESVKMKLEYEALCKQFQEILESYRQKMEQASV KLEHTKPSTSASTASKPKEGNTVSLVDVKTALRRDFKIMGAIGGEEQKDRLSFVSLIRQIDAGMDKGCNEREIIDAVIRA ISPSLRLRSYLETMKELTVAKLRQMLRAHYKQKSGTELYQELTKMCHSPKENPQEFLIRALDLRQQVLIASQAEDGTVKY EPSLVHPLFLHAIETGLQDEAVRNKLRPFLQKAEVTDKELMEQIFVVVSQESERKEEGEEARSQSDTPAMKRCQSEASHS TPDVDLEDLTEDQKIAVATMLREEAESFSKDDDDVRTFDEHIKNVRTVLRRLREHGIKLKTRKCKMFKKEVNYLGRIVSA DGYQVDLSNVRAVLALKEINPKTVGDEDQGELEKLHYCLANPPILGYPDYRLPFVLHTDASNEGLGAVLYQRQSDKAFLR IVVSFVVLHLVEAVGLLIMEATVKALETKVAQLEANLGKKSETASSSHGAMSSSIALADHSLRIKPETFSAASGENWLVW LRKFKNIASLNKWTAELQCQILPAYLKGLAEQTYFSLTAEQTSTWEGLQRALTDRFHPKESRQVHGSTLRAKLRRPDEDL HQLRCEIARLVELAFPDDPLVILDRTARDFFIGALTPLALREKVLDYGPNTLDEALAAALRYESNQTVLSKGSAHVLSST SEEMDGNSTLRQGTPEPPVWAQQLFEQQAENLEKLKNIPQGRQGRNDSVQYPQGPRACFKCGSLNHFIRNFPHQVNHDQG NWRRAGRSQKGPWDLGSAKGVKHTIDSGSAQPIQVPPRRIPFHKRQEMRRQVDEMLEAQIIEPSESPWSPPVVLVAKPDG SQRFCVDYRALNKVTKRDLYPLPRCDDILESLAGAQWFSHLDLLRGYWQIDVVEEDREKTAFATPDGLYQFRKLSFGLTN APACFMRAIHLVLKGLC*RFLARTDHSALQWLQNFKNPKGQVARWLERLSDFDFEVEHRSGQSHGNADGLSRLTWKSINS SEQDEDAVLINSMNVEPLSRESIKVALKQDPILSQVVDWLKTGVKPARCDVDGSGCKLLSYWSQWGRLLLRDGLVLRRWE NEKTGQEIYQQICLPESFVPQVLHVLHNSPSAGHIGVSKTLEKVRRRFYWHGMREDVENHIRRCGPCAQVNDPSKLLRAP LINIKSGLPLQRVAIDIVGPTPRSSLDHEWLLLVSDHFTKFAQAFPGDGQVERLNKSLVKILCKLISDHRRDWDDFVPKV VLAYNTSVHESTGFTPYRLMFGREAILPLDVVLKLETSPPQRGVQSYPDYVVQQKKQLEETEHLVRESLKRAQRTQKAYY DTRCNGQRFHVGDRVWYRNRASTGSKKFQKPWCSPWTIVKALSDVTYRIEEEKRKAGQRRKRKVVHFNYLKPCFTPPPVH EKRPQANTSGEAARSEPRDVLQPTQEGTDDSSGVELEWLEDPDHRGPSNASGSGSKCYPRSRCTILGSS* |