Gene
Gene Model ID | aug_v2a.12946 |
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Locus | scaf5204 : 28756 ... 38031 : + |
To GenomeBrowser | scaf5204:28756..38031 |
Genes list of scaffold | scaf5204 |
Manual annotation
Study field | Retrovirus |
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Gene name | Adi-Retrovirus-related 20-46 |
Description | DNA sequence of this gene model showed similarity with that of Adi-Retrovirus-related 20-1. This gene model contains Rapsyn_N, TPR_1 and TPR_2 domains. |
mRNA evidence |
Transcript
Transcript ID | aug_v2a.12946.t1 |
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Definition | - |
>aug_v2a.12946.t1 ctctatttcctttcgacaaatttatccgcttgttcctaaaacctgacgattccttttaaattgtattttgcagatgtcag agaggccattgaggttttaaggaattgcctagatgacgagaagaagggtacgtcatatatatctgtattattaactataa cagtaacaataataaaatgataggactgttgatgaatgatgaggtttatacattctatttctttaaaagtgaatattcat tgtccacttataattcatcctcgaaaatcaggggctcttttcctaagaaaaaccgtcacaagcggaaactcgaggaaaaa gtggttgccttgctgcacattttttggggactaattatatcacgttaaaagactgaatgattgaatacatgagaacttga tggaatgggatttgcagttcatacaccttattccaaaatggctgccaataaattattcttttgtttgcatgttaattagc cctcttcgcctcattttcacttcaaaattcttttgttttttatatatatgttgacgaggcgaggagggctaattatcatg caaacaaaagaataatgtattggccgccattttagaataaggtgtataaaacgaaggtttccttattttgtttggaaata aatgaaataaacactaaactgtcttttgaactcaaagagccaagcagaataagatcaagcgatctgcacttcacccaagt ggtcaagaaaattttaaacatgctatacgcaaagatatcaccaaaattctaagccgttaaagaattccgttggaacagtg nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatgttaggaaa taaagtcaatagtaaaaaaggtactcacgcaaccaatgcgatctataacctctcagtccgcgatgattacacagacacag gtgtctaagaaagcaaatgaaaggttctatcgaaactattagtctggaagcaaatgaaatcatgtgggaagttcatctta gatgtctgcacatggtaagagaagtcacgtgacgagtgaccattgaaatgaggccacattgattaactgttcatgttctt taaacacagtaatgaaatcacaccaaaatctcttcaatatatttcttaatgttctaaacaaaccttagtgttatcctgtg gtaagagggttacgtgactaagtcaccatagaaacgaggctgagatcttgacatagctttttaattggacaacacttgag tgactgccgacaaaattttaaagatatgaccctaaaactttgatagctaattcatggaaacgattctgactttgtaataa cctgaaaagcatttcgctgttagaattatgttatgaatcatccaaaaactgtttgtcaagtgttccttaccaaagatgat gctgaaaacatttttcctcaatcaaaataatactctgcctttgccttttcctctttctttatagctgctactacccagtt acaatcccttagacccaaacttacactactctaacataaataagtttaatatcactatgaccaaatcagataagtcactt gaaagtctttgctctaaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnacactgttctatctattcctatcgtcactttcatgcacaacattctcgtcttcttcaagatcatcatttggactatgg ctcttgtaacaacagaattggtcttgcataaagcaaaattaaatgcaggaaatccaactaattcattggaaacccaatta ataaaagttttgtaaaaaaagtgtgtttaagtcctgatgagttggcagtggcaaaatataaaagaaaaagttatctagta ttattatgtagcagtaaaaactatctgtatgctatacagtcaaaggaacacagggcgccaaggcgtgacctgtgctctgg ccagtgaaacttgaatcaaaaggtagtgtacaattaaaaagtaaggttaaaatatgtatatgtatatatatttcaatcac tctaacttgcttactggtcttgtcaatgaccgtggcatcgattctattagcttttacttgagttgtatcagcgaataatg ggacgtcccagaaggccgtcgcatgcacattctcatacagcggcttgggtgtgacttgtgagaaccacggttcaacttta gtaataaggtctaaagatctgaggacttcaaagaataagatcttgagtgcattgttatgcctctgtaggtacttagtcta tgccagtgcactacagccagataggatgtgccgtacattctccagggaatccccgcataggcggcatttttcatcagtga cttgtgattttgtttttctgttgtagtaaaccttggtaggtaacagctgttggtaaagctcttgtactccagcgatggta tgcgttggggtattcttccatgaagaaagccacgcaaagcattcctccagcttaactttctcgtcgtcccatctgttctt gataagctttccttgccatctttcctcagatatcgttaattgtgtctccagctggcgggctttgtaaattgcctgcctta ccttcttagcttcgacttctttgccatcggcgacagcaactgggttagggaagtttaaccacaaatgtagatccagttcc tctgcttacttcttagcatctttaatgatggagtggcgtccattttgtacggctagctcttcaaaggatcttacgactgc catcatagggtcagcgttacagtaaagctttactgctgctttgatcttagcgttcttgtattcattctccacggacataa gacctcttccaccgagcttcctagtgatgtaaagtatcgctgtcgatcccttagggtgatttcccccattctgcacgatg atcattcttccctctcggtcaagctgttggatgtttgctatcgaccaagtttgtgtccacatcaagtaagtaagtactgg taaagcatactgattggacgccactacttttgcatgatctgacaatgggctggaccagatgattgatagcctctgtaagt acgtctttgctgcggcttccaatacttgcttatcctcttgcttggtgttttcgaagaagcctaggaacttataggtgtta tgttggtccaggcacttgataggtttaagatcagctatcttcatatctccaattccttgctcgacttgtcccctcttcac gtgtatcactgcacacttcttctcattctacttcaaaccggtgctttccattccattctttgcgactgtcatgactcgtt tcagcttgttctcagaagcagcaaacagcttcatgtcatcaatgtatagtagatgagtgatcttagttgatataggcttt gatagactgtatccctcagtcgcccgtaccttccaagcgattggattcaagcacaatatgaacagcataggacacagcgc atcaccttgtggcaatccttttttaaaacgtattgtaggagagatctctttgccttgggtcgtttaggcaacaattctag tgttccagctgttggtaagcttctccaacacctcagcaaaccatagagggaatctgcgtagggtgaacatttccgataac caaccgtgatcaaccgaatcatacgccttagccacatcaatccatgccatgctgagatttcgccttcctctctgagcatc gtcacaaaccatccgatcaataagtaaattgtcaaccgttccactgcagttgccccttgcaccacgctgctcgcgttgta ttaaaccataagtttcgatgtgttggttaacctgggctaacaggcatgcggtgtaccacttatataggttattcaggcag gtgatagggcgttggctgtcacttctgaactcaccaggcttggggatcagagttgtcttgccttccgaaaaccattagga aaattgaaggtcttcaagttgagcagtggcctggaaacaagtggctatttctttatgcaagattgttgcgtttttccacc agaaattagcaatacggtcggggccaggtgcgctccagtttttctttctcttgatgatcttagaaacttgttcagaattc aaattccagccatcagtcggaacttccggtactacgtcttccattgcctctctaacctctgcttccgtgtcctcgctccc tttttcttcccatagacttctccaaaaactactcggttcatcaatgttagtgaacatatggttattgacctgagttcctt gtgttactgtgtcgtactttggtttgtcaatatccgcctggctttctaacattttttttcaaaagtagcgtacatatttc caggatctacataaagtttaaattatcattattattattattcggggggttgtgccctaccactcacaaaaaaagtgggg atgctgagaccccttccccgtgcccccatcccccctgcctccgccacttatggacttgcttctgaaaaccctcttcttaa aacccctgaagggttaagttttagtcatccttaaccaactaccaaccgttagttcgaaactagttcctgatcattaagac ccgccctctataaatatcgaccatcgtcatttggacgagaaaaaatgaaatctctcaaacattctcagaagaagggtcta tataagtgattcacataattataactttcagcttagttcgatcgtattttagctgtagtgcgaccatcttggttttgccg ctctgagagggctttaagcagccattttagactacaccttttagaatttgcctttcaaagaaaacgttacaaatccgaac atagcacagctggttagagtgtcgcaccggtatcgcgaggtcacgagttcaaaccctgttgaaatcctgaccttttcagg cttctatacgcacttgcttaagttgtgttcataactgcgatgatcatagcttacttgatttcaactcagtttattaacgg ctgtggtgtattacagtgatttcgcagaacaaatcatcaaaaatgcggctatatccgactggaactataatttgatatat ttttaaatatccaattcttgatattttacgaggtaagtggaatttatcattattttcttagtaaatcgttattttcatgt tgttatgcttattacgaaggcggtgtttgttgacaaaagtacggttaaaacttcttcttctacaattttgtcctttaaac tgccgaaaaattttactgcattttcttgcagacgagacattgctctttgacctggaggctgttttaggatgccaactaat gtatctttagcgatattttcctttaaactgggccattttttgttggcacttgaagagtagttcactactaggtaagaaat taaacattttgtaaaaaaatcagatctcaatcaaatttccaaaaaagcttcttaacttagcaacaaagatttgcttgtct tgaagaatgcgattttgttcggatttgtaacgttttctttgtaaggtaaattctaaaaggtgtagtctaaaatggccgct gaaagcctttcagagcggcaaaaccaagatggtcgcactacagctaaaatacgaatcgaactaagctgaaacttatattt atgtgaatcacttatatagaccattcttctgagaaagtttgagagattttattttttttctcgtccatacgacgacagtc gatatttaaagagggcggctcttgagatgtcctgcgttgatcactatgcattgatgtcatcacaaatgagaagaaagcaa gcagcatctaggcgatcagaggtttgaaatttgcaaaataaacagtaaccatgcatgattcctaaaatctgaattgctgg cattaacgcttttttcatctccgttagtcaaccaacattcgaagagaaattagataaaatcatttcacactcattgtatt ggaaaatattcctctggctgacaagcatgtcatttctttgtttgtctcgctaattctttgctcatttctttctttatcta tttatggtaaaaagaaatggatgacgaagacagaaaacaaaaagcctgcacctgtaaaagaagaacattccagtcactgg gtaattatcgaaaagtcattgagtatcttgaaaacgatttgaaaattgcacaagaaatcggtgaccggtgcggagaagga aagagctttggaaatctcggtattgctcaccactcattgggtgaggatcgaaaagccatagattatcttgaaaaagattt gaaaatcaaaatagaaatcggtgataggaggggagaaggagtagcctatgataaccttggtattgnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnntcgtgaaaagatttgaaaattgcgatagaagtcggtgatcgggccggagaaggagcagcctatggaaat ctcggcaatgcttaccagtcactgggtgactaccgtaaagccattgagtatcatgaaaaaggtttgaaaattgcgataga agtcggtgatcgggccggagaaggaggagcctatggatctctcggaattacttaccagttactgggtgaccaccgaaaag ccattgaatatcttgaaaaagatttgaaaattgcgacagaagtcggtgttcgggccggagagggaaaagcctatacaaat ctcggttatgtttaccagtcactgggtgactatcgaaaagccattgagtatcatgaagaacatttgaaaattgcaataga agtcggtgatcaagctggggaaggaatagcttatcacaacattggagctggatacttttgtctcaaacaattcgaaagcg cggtggataattttgcttgcgctgtgaaagcctttaatgctgtgagatcttgcttgaagtctaaagatgattggaaaata agatttcgtgagctacatgaaggcacgtactctggcttatggcagtcgttgctaagaattcaaaggatcgatgaggcttt gtttgctgctgaacaaggacgagcgcagactttgtctgacaatttgctgattcaatacaaactacctgcgtccttatcat gtgacaccattaaccccaaagagacaatatctcgcctctttaagaagctttcttcacctattctttttctcgcagtggaa gaacttacaataaacatctggtttcttggcatggagaagaaacctgtttttcgagaggggaggctagggggttatagaac agagaaagaccctatacgcgccttactacaatcatgtttagaaaaaatgggaagtgaaaatacagtaagatgtgaagatc gttcatttgatgaacttacccgtgaatgcccgtctatcagagaagtgtgcgaagaggtaaaaaaccagtgtcagtctaca gacaatcatttcaagccattttatgaagcaattattgctccaatcgttgacatgctcggacctcaagacgatgagttggt cattgttcctgatggtgcgctttgctttaccccatgggctgcagttgttgaatcgattaggattcgcattattccatcac ttacaagttatcaattgatcttgagtgcaccagaaggccatcacaagacaggggcgcttttggtcgggaatccgtgctta aaagagttggagaaacccttaggcgacttaccatatgctcaaaatgaagtagaaatgattgctgcaattctcaataccag acctttaacagggagacaagcaacaaaagctgaggtgatgaaacggatgtcgtcagttggtttaattcatattgctgccc acggaaacgagctcactggagaaattgccttatctccaaaccctggatgtacttcgcaattccctcagaaagaggatttt attctgaaaatgtcagatgtacatgctgtcaatcttcaagctcgtcttgtagtgttaagttgctgtcacagtggacgagg cagagtcttaaagggtgagggtgtggtcggtatcgcacgtgccttcttggcagctggtgctcgttctgtgttggtggccc tatgggcaatagatgatgaagctaccatggtgttcatgaagagtttctaccaacacctgaagaaaggaaaaactgctaat gccgctgttcaccaatcgatgaaatcgctgcgtaagtctgaggagttctctgggatgagatactgggctccattccaact tatcggagatgacgtcaagattgaattcgaagcgaataatgacgtcaaagtataaaagggttaactgttctgggttgttt cttttgttttgtcacgctggcgaaattttagttgaaaccgagagaaagcttacttcagatcccgggaattccattgagtg tgtcactctgttgtttttatagaacaacaataattcaagaagcgaggactttcacgaaaaaaaaatggtatacagc |
Protein
Protein ID | aug_v2a.12946.t1 |
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Definition | - |
>aug_v2a.12946.t1 MDDEDRKQKACTCKRRTFQSLGNYRKVIEYLENDLKIAQEIGDRCGEGKSFGNLGIAHHSLDLKIAIEVGDRAGEGAAYG NLGNAYQSLGDYRKAIEYHEKGLKIAIEVGDRAGEGGAYGSLGITYQLLGDHRKAIEYLEKDLKIATEVGVRAGEGKAYT NLGYVYQSLGDYRKAIEYHEEHLKIAIEVGDQAGEGIAYHNIGAGYFCLKQFESAVDNFACAVKAFNAVRSCLKSKDDWK IRFRELHEGTYSGLWQSLLRIQRIDEALFAAEQGRAQTLSDNLLIQYKLPASLSCDTINPKETISRLFKKLSSPILFLAV EELTINIWFLGMEKKPVFREGRLGGYRTEKDPIRALLQSCLEKMGSENTVRCEDRSFDELTRECPSIREVCEEVKNQCQS TDNHFKPFYEAIIAPIVDMLGPQDDELVIVPDGALCFTPWAAVVESIRIRIIPSLTSYQLILSAPEGHHKTGALLVGNPC LKELEKPLGDLPYAQNEVEMIAAILNTRPLTGRQATKAEVMKRMSSVGLIHIAAHGNELTGEIALSPNPGCTSQFPQKED FILKMSDVHAVNLQARLVVLSCCHSGRGRVLKGEGVVGIARAFLAAGARSVLVALWAIDDEATMVFMKSFYQHLKKGKTA NAAVHQSMKSLRKSEEFSGMRYWAPFQLIGDDVKIEFEANNDVKV* |