Gene
Gene Model ID | aug_v2a.12958 |
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Locus | scaf5209 : 3916 ... 14164 : + |
To GenomeBrowser | scaf5209:3916..14164 |
Genes list of scaffold | scaf5209 |
Manual annotation
Study field | Retrovirus |
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Gene name | Adi-Retrovirus-related 78 |
Description | This gene model contains Retrotrans_gag and rve domains. |
mRNA evidence |
Transcript
Transcript ID | aug_v2a.12958.t1 |
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Definition | - |
>aug_v2a.12958.t1 attagtattgggctacctgtgattcgagcccacaattgtcagcggtattgctttgtaataaagcttgtgtttttcatggc cgccattgtgttgtgtgttgttgactcattgaacgagttcttgacatatttctggcgatgaggatgggataatttcgcat cgaaatggcaactcttggcaagatagaggagtttcacaccactactggaaatatcgagcgttatctcgagcgattagagc agtatttcgaggccaatggggtggcagtcaacgacgatacgtcgcacaagcgtcgggcaattttgatttcagtgataggt gcaaaggcctatgatgttctctctgacctctgctcacccgtgtctccttcagccaaaacatacacggaattatcgacgat tctcaagtcacactttgctccaaaacggctagtaatcgccgagcgatacagatttcacagctgcaatcaagccccggggg aaacggtgtcaacattcgtggccaacctcaagcgcttggcagccacgtgcaacttcggaactcacctaaatgaagcactg cgcgacagatttatctgtggaattcacagcgaacaaccaaaacggaagctactaacagctgattataccttcgagcaagc cctcaaactcgctactaagcatggagacggnnnnnnnnnnnnnnnnnnnntaacagctgattataccttcgagcaagccc tcaaactcgctctaagcatggagacggtggagaaagacgttcgcgaactctccaccagcaatacaacagcgagtaaccaa ccagtaaacaaggtcactggaaaaccagggcgaaggttcaataagtatgaaaacaagaaacctcctaaaccagaagttca ggaaaacacctgtttaagctgtgtttatcctttcaagtttgtacgtatttttgttttatcgtccatgtaattaacttgct taatgtgcccttagaggatgatagagctcgattggaggttatcagtcaactccaaggatctatctcagcgtacaagggac atctaacaaggcgttacaatgagattagatctttatttgtggatgccgcacccgttagtgaaattatgatgaaaaagaac tctttggatgaccttttttcgcaatacgtaaccgttgtggagagacttctgcagactgtagaggatttggatgacaagga aagagttgcatttggttaccaatgcgaactggatgtgaggtgcctcttccaggaaaaattttctggtcggataaggtcaa tgcagggtgacccttttcctaggtccgagttgtcatcagctcgaactccacatgagaaaccacgcgaatctcctcgaggc attggttcaaaccccccgataataaggacttctcggagtggctcagggagtgattcgggacatagtaaaggatcacaagc gaaactggcggttgctcagctgaagattgaaaacctcagggagcagcaaagattgaaggaaaagcaccatgagttagata aagaaagcctcagagtagaattgcaaatggagctgttaaatgctcgtgcggatgctgaacaagctaagattgagttatcg atggccaaagaagtgagcaaaggcttgtccaacagaaccatcagctcactgaacgtacctagacagacacttcatgaaac agttgggaagtatcttgaatcatatgatgaagttccgagactaactcctaccccgctccagcagcctgaaagaacacctt atgatcaaggatttcctcgccattctgcggattccatcaatgttccagaagtacaaaggttcctgcagtcgcaacaagaa gccataaagcaacaggatgaaaccgttcgtttggtggctactggtttcgagaggttggagatgcccaagagagagttaat gtcttttgacggtgatccgaaggggtacccccgtttcatcaagggctttgaggtaaacgtagaacgcagactacgatgaa aggctgaccttcttggtacagtattgtagaggagcggcaaaagaggcaatagagaactgcattatgttacctccggaaca aggctaccgtgaggctaaagatatcctacataagaactttggacaaaagcacatagttgtacgtgccttcattgacaaag ttattagaggtcctcaaattcgagcatccgaacccgacaagttctcccagttggcccaagacatgaggaactgtattttg aactctgaacacatgcattaccagaccgacattaattccatggacacgcttaagagggtagttatgcgtctcccttccca tcttcaggcaaagtgggccgaggaatcgagtgggttgattgaaagtggaattgagccagagttctctcacctgactaagt ttgtagaacgacatgcagttgttgctaatactgcgtttggcaatttggtagggactaagcctgatggagaaaaggattca aaacctgtcaggagaaagatagcccatgatcaagcagtgaaagttacgactcttgccacacaaccttctatggttatcgg agacaagaactttcttgcgaacccagacagactcaaaatgcagggatgcaagtgtcaagcagtcctgaatttccacatct gtctgcttgttctgcgacggctctcacaccttggagaaatgcttcaggttcagggataggtcctataaagaacgtaagga gtttgtgctgaacaagagactttgtatgaactgtttgaaggagaaccatgttgctaaacgatgcagattagcaagggcat gtatgctcagtagctgcactagacgacaccactcactccttcatcctcctccgacctcaggggaggaatctagagttgct aactgtgaagcccagcgagttcctgtcaaccaagatccatgtagtgcttctggggccagagaaggtcagtgtaatgcgat tggttccagcagaccccgtgttggttttagagttgttccagttagagtccgtggttgtgatggcggaaccgaagtagaga cgtgcgcgttcttggataatgcttcagacaccaccctttccttaaaaggcctggtccatcggcccggnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnntagtcctccagtacttaaggaatgaagccaaacgattccagatattcgtagccaacagactggcaataatt catgatgtttcgtcatcacgtcaatggcgccatgttgattcacagtcaaatccagcagatctagcttcgcgaggattgtt gagtatcgacactgagaaattgcgactttggcttgaggcgctcctctcacgttattcctctctctataaactccagacgt cagtggcttggttgttgcgctttaaagatcatttacgtacgcgagttaacaagcttcccaccaagaaatacgccaaagga tgtttgacagtcaaagagatcgccagagcaacaacaacaaaagaaatagtgaaagttattcaaagagaggcattccctaa ggagctggtcattttgcaaggaattacacaagaaccgacaagaagttcctctaaccgaaagttaggatatgccagtccac tacacaagttaagccccttccttaatgatggtgtaatttgtgttggaggacgtctcaattatgcgtgtatcccatttagc gccaagcaccccatgattttaccgagcaagcaccatgtgtcagacttgatcgttaaagactaccacgaaaaggagggcca tgtgggcgctggacacgtactggcaagtgttagacagaggttctggatccttcaagggaatataaccatttgacgcgtgc ttgggaagtgtctcaaatgttgactctggaattctaacctatgtgaccagattatggctcagctaccgtggccaggagtt agccctaactccccaccgttctcatctgttggagtagacttctttgggccgatactggtaaatgtgaaacgaagccacgc taaaagatacggatgcgtttttacttgcctcactattcgtgcggttcacatcgaggtggcacacgtcctcacgagtgatt catttattcaagcatttaccagattcgtaagcagacacggggcgccgatcgaagtgttcagcgacgatggaacaaatttc agaggtgcagacaccgaaatcaaggttgctttaagcaagtggaattctgatcgaatcagtacttgtctccgacgtcaagg tgtgcaatggtacttcaatcctcctttggctagccacgctggcggtgtcttggagaggatgattcgctcaatccaaaaaa ttcttcgcttcctcttgggtaaccagctagttgacgatcaaccactgcttacctttattgtagaagtggaaaatattctg aacgaccgtcctcttgttcccccgtcaagcgacccacgtgatcctgagcccttgtctccaagcaaacttttccttctacg ccctaatatgtgctgccattccgacaaaatgcacggtgttaacgatcaatatggaggcaaacgttggagacaagctcagt atttagcagatacgttttggaaacgctggatccgagaatatttaccaacgcttcaagtgacacagaaatggcttgagaaa cggacaaaccttgccgtgggcgactacgtgcttctagtggatgagaattgtccacgcggacgttggcctaagggtgtcat ccaggaagtatttcctgatcagcagggagttgttagacaagttactgtcaagactgcaagtacgagtttacgacgtcaca ttcgcaaattgtgccttttggaacgggcactgatgagctaaaagtgaatgtactgtgaaattttatttttcggaaaggct tactttatcatcatgtgcgcctttcggggccggcgtgatactgcatatttataggtgtctcattaacagcttttaatggt tattttctttctctcattcaaggcgttggcctcagaagggcgtagttaacacttaccctcattacgcatgttttgatatc tatatatagtacaggcaattttcctacattttttttttggcttctctgtggtcttgtagtaaatagttcgaatttaccat taagttattaagtttgcagtttttcctgggctgtttatttgtgttgggccgtttagcttactccaagtcttggagaaatc actgataaggtttgtgtttatcgtttcaagtttgtacgtatttttgttttctcgtccatgtaattaactcgcttgttcac cttttttaacttttgttttagaaccagcaccttgttatagctaggctgcgtatctgtggtgaatttaccgagaagaaaat attaaagcgatagtggaaaacggcgattcagttttcttgcttctacagtcaattatgtcacaccaaggtgacaggtatgg aaagtaatacatacaggtgtggagtaccgtggacacaccaagacaaccaaggctcgagactgagcccactgtatttagag ctgtttttgttttgcatggtctaccactactcaatccgggtggatggttaccaaacccggcagaatactactatctacat cccctgttgaattcagcaaacaacaatggtctgtttttaatgatagagtcaataaatttcacaaaatagaaattcaactt aactaagttggaggttttacagacatgtttggaataaaggttctcttatttttctagggttcataaaagttttctctaat cacaaatttggtaaggcagatactacatacactttaccaactttactaagccnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtggcatccctgc ctacatgccttcagaccatgaagtaatgagcaaagtaccattcatgagtaaagacttacaggagttcatgacccacaaag gcattacggtgaggcataccacaagtgaaaaccctgcgggtaacggtgaagttgagcggtacaacagtaccagctggaaa gcccttctattatgactgaaatcctagaatcttccaactaaggactggcaagtagtccttcctgaccttgcacatttagt cctttccctcctgtcccctgcaacaaacgagacacctcatgagcagttcctgggtttcccttattgatcctctacaggca gttctatttcttcttggctgactgagccatgaagctcatgtgatgtctgaaatagcaaatttgaacccttggttgatgag gccgatctactccaggtcagtctgcattaaggacacatctgctaaccccatggttgggagaaaacagtatctacaagaag tcttgctcccaaaagccagtccataacagcccaaccagaatccagtattgatcaaaccatccgtcttgcatccaatcggt gacacagctggtccagctggagagcctctctacaaagaagatgtttaccctggaatggcccatgcaagtgagcaggtccc catagcactaagttgctcccagtgtcaacaatgccccatggtgaggcttgatctttagaagggggtaactgcagtgacaa taactgacccttattttgtaaacgtatttgataaatgcttataattatacagttacagttaccaccatacctatgtaagt gcctgcacacatttttagcagacactcacttaaagttatggcagtcatgtttgtgtaagcattaggttttactgaataaa agcctcagttcttccacctcctctagtttgtcctttaatacactatgattgaattggacagagcattcttcaaatactaa aactaaagactgaaaaaggaaatcttaggagcaaatgctatagcccattatttggcacaaagatcttcagaatacataag gttacaatttctatataactgaaaatggccgccatacatctgtaaacctgcaatgcaagggggttttagatgaacacttt taagcacaaatcttattcagagtaatcattcagatcccaaaatgttgggtaacgcaatgtggcacaacgattaattatat atcgatataacaagcattttggtcatttctccacaaatttgttacatcgatataacaagctttcactatatcaaaccaac ttccccagtccctcgggctttgttaaactgaggtttcactccattgctaaattgagaaatgatcctgggctattcaaacc atctgagattgctctaaaggggccacatcacttactgatactgggtatctgtgatggcaaagagtctcacaaaaactttg tcactacgcaaactggttgttgtcatccttttatccaaacccaccacaccatggcaaatggataaaggtatcagtttacc cttgcccaaaacatcagaaagaaatattgtattacaccaagctcataaccaggggaacaactctaggcttactaattatc agtgcctatatttgcagggttcaagggcaaactgtgatgtccaggttgtaactgattataatgcaagtggtaaaaagtat gcatctacaactgaaccatgctcacttgtcattaaaactacctttaattatatcattgataactgtaataatactgtcca tggagtaagagatgccaaaggcaacatggaggcatccatgcatgccatataagatcgaaacactaagaaatctacacttt taagctggtactgtggcgattggatttaagtagtagagtctgataggaaacgtagtactatcttcataacaagtatacga tgcaagatatgcatgaaacaccagaaaaagctaatgatacaagaaacttcaacacagcctggtgtcacaatcgaggtacg gccaacgtcaagaaagatactgcagtgtgttcacttacatgaaaggagagctacttaagcttgcaatgaagttggagcaa aagagtgagtttatgaaacagccaggtccactacctttgtatgctgcaacacgattgggaaaaggcatttttcaagctga accagcaagagagagagagggcaaagaagtttattgaaattgctttcgccattgtgaaggaagggnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntattgttgattattgttgcctggaaaaagagatgatcaaaatgaaaaat ttcttttactgtttacctgttagtgtagttattgcacaaaggtgtccgccactactcaatcctggtggatgtagcccaga ttcaagctacaaaaagaaagccatttcattctttatgttgtctcaggcactgagaaacagagagtcatgttttttgccct tcaaaaagtcgaatgtgcaacttctgcaggagtgttagctagaatcaagaatgcctttcaaaaccacaacatagatgcac taaaggaacaaactgttgggcttggtgctgatggagcagcagtcagttttggagtaaggggaggagttgccactctcatg aagacgcaagatggcattgattggctgatcccagttcactgtgtaagtcatcaacttgaaatgagcatagcagatgcttt gaagtcaacagtgttttcagagatggatgaaatgcttgccaaaatatactaattgtacaaaaccagcccaatgaagatga gacaattag |
Protein
Protein ID | aug_v2a.12958.t1 |
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Definition | - |
>aug_v2a.12958.t1 MATLGKIEEFHTTTGNIERYLERLEQYFEANGVAVNDDTSHKRRAILISVIGAKAYDVLSDLCSPVSPSAKTYTELSTIL KSHFAPKRLVIAERYRFHSCNQAPGETVSTFVANLKRLAATCNFGTHLNEALRDRFICGIHSEQPKRKLLTADYTFEQAL KLATKHGDXXXXXXXXTADYTFEQALKLALSMETVEKDVRELSTSNTTAKDDRARLEVISQLQGSISAYKGHLTRRYNEI RSLFVDAAPVSEIMMKKNSLDDLFSQYVTVVERLLQTVEDLDDKERVAFGYQCELDVRCLFQEKFSGRIRSMQGDPFPRS ELSSARTPHEKPRESPRGIGSNPPIIRTSRSGSGSDSGHSKGSQAKLAVAQLKIENLREQQRLKEKHHELDKESLRVELQ MELLNARADAEQAKIELSMAKEVSKGLSNRTISSLNVPRQTLHETVGKYLESYDEVPRLTPTPLQQPERTPYDQGFPRHS ADSINVPEVQRFLQSQQEAIKQQDETVRLVATGFERLEMPKRELMSFDGDPKGYPRFIKGFEENHVAKRCRLARACMLSS CTRRHHSLLHPPPTSGEESRVANCEAQRVPVNQDPCSASGAREVLQYLRNEAKRFQIFVANRLAIIHDVSSSRQWRHVDS QSNPADLASRGLLSIDTEKLRLWLEALLSRYSSLYKLQTSVAWLLRFKDHLRTRVNKLPTKKYAKGCLTVKEIARATTTK EIVKVIQREAFPKELVILQGITQEPTRSSSNRKLGYASPLHKLSPFLNDGVICVGGRLNYACIPFSAKHPMILPSKHHVS DLIVKDYHEKEGHVGAGHVLASIMAQLPWPGVSPNSPPFSSVGVDFFGPILVNVKRSHAKRYGCVFTCLTIRAVHIEVAH VLTSDSFIQAFTRFVSRHGAPIEVFSDDGTNFRGADTEIKVALSKWNSDRISTCLRRQGVQWYFNPPLASHAGGVLERMI RSIQKILRFLLGNQLVDDQPLLTFIVEVENILNDRPLVPPSSDPRDPEPLSPSKLFLLRPNMCCHSDKMHGVNDQYGGKR WRQAQYLADTFWKRWIREYLPTLQVTQKWLEKRTNLAVGDYVLLVDENCPRGRWPKGVIQEVFPDQQGVVRQVTVKTAST EKQRVMFFALQKVECATSAGVLARIKNAFQNHNIDALKEQTVGLGADGAAVSFGVRGGVATLMKTQDGIDWLIPVHCVSH QLEMSIADALKSTVFSEMDEMLAKIY* |