Gene
Gene Model ID | aug_v2a.14658 |
---|---|
Locus | scaf6175 : 14017 ... 25284 : - |
To GenomeBrowser | scaf6175:14017..25284 |
Genes list of scaffold | scaf6175 |
Manual annotation
Study field | Retrovirus |
---|---|
Gene name | Adi-Retrovirus-related 39-50 |
Description | DNA sequence of this gene model showed similarity with that of Adi-Retrovirus-related 39-1. This gene model contains NB-ARC, NACHT, Transposase_11 and Plant_tran domains. |
mRNA evidence |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.14658.t1 | gi|449691294|ref|XP_002166584.2| | 8.0e-39 | |
aug_v2a.14658.t1 | gi|449691647|ref|XP_004212750.1| | PREDICTED: putative nuclease HARBI1, partial [Hydra vulgaris] | 2.0e-34 |
Transcript
Transcript ID | aug_v2a.14658.t1 |
---|---|
Definition | - |
>aug_v2a.14658.t1 gaacgtcctctgagcttgagatcacagcacaagcagtggaagcaaggaagcggaaaggtatagaacggaacggttcaaaa tttgcagctcatagaagaagtaatatcatactattcttgatcattcaaaattaagagaggaaagttaaagtgaggacatt ggatgactgacttacaatcctagaatgtccagtaacaattttagtgagatacttgtttggtattttttgctaaaaattgt aaagggaataaagattttttagagaaacaagataggtcatgaacagataaaacttcaagggattttgttgtgtcaatgtt atgtatattcaattttccatattatgaggagatttgcttgaacaatctagttatttgtagtttactagagaaaccattgc atggaaatgagtaaagtttgcagtcatacaaagaagcccagctgaaaaatcagttccacgctctaatggggctctagccc atgacttgtgagattgtgctgcacactactctaccttcgatgagaaatacataaggtgatcaaatgcaaactaagttttg tgccccacactgagtgagtgtgcacaaatactttatataagtaccttgtaaaagtcatgcccttatgaatttgaaatgag cgatgatgtcactaatatcaaacatttatatctgtaatgtttcattaatcatatttgtcctcaaggaagtttcctataaa aaaaaaatgacagttttttctcttgacaaaaacgtacagtaagagatttctggtttttgaagcttggtacatttcataaa acataaacgttttatgaacagattttcagtagcataacaacatttcctgcaattgttcacaggtgtactgtcatgttatg ttctatgcaatatccattttttctataggataacacattttgtttgacattgtctatagacttttctccacgtgttgcac ccgaaacgaaaggaggaagaattgaaaagaatgagagtgagcaggcagcaggtacagtccatgaaatgcagcaataaaat tagttgtcagggaaattttaatgattatcatttcaaaggagtttttttccattttttcattatggcttttacttcttgcc agggcttgataaactcaatgaattttaggaatctttggctcgcgatctctattttctttgtgccacccaaaaaacataat ctcatgcaaaaaaggtgtttgttgtctgttttagttgtcctataaagagtgcgctcggtcattaattgtgtgttgttgta aattccttccctgaaagaagtgtgaaaagaggaaacactattgacgctaaaaattattaagtatattgaaggatttttca agacttgtaagttacgaaactagggcaacttgatctattgaaaaattaaaatcgaatagttttttctatataaataattg cgtctctatgtggaggttgggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnaatggttaaaatttgatgactctattagaatatttggttttataaattgatatctgtttttattcctt gtttgttttttgttgcagctcgtgcttcgtgtccaagccacgtcatagaggggatacgacaagtataccggaagtgtgaa ggggtgattgtgccagttccttggtgtgaaagattcagcttccagatagagaacattttcaccagacttaggatagttgc aaaagaaaagacacgcggaatagcgactacaaaagaagtcaccaacatgacaggtattttcacaccacacgagtgttgcg aacaaccgctgattgtgttgattgaaggcgaacctggtatgggaaagaccacctattgccaaaagctggtatttgattgg gcaagcaaacaatgtcgtgaatgggatgagtcttttccaagaattgatgtgctcctgttcctcagatgtcgtggaatcaa atctactatctgggacgctattgaagaccaaattctgccagatgaaattaagccggaggaaaaagagatgtttttccaat tcttgagagaaaatccctccaaggtgttgcttgtgctcgatgggttagatgaggcagacccgcaaaaactggaaatgtac ttgaaacttattcaaaacaagcagcttcctgggtgttacattgttctcacgtctcgccatgaagcggggagtaaagtgaa gccgtacacagacacgttgttagagattgtgggattcataagcgacgatgcaaagtgtttcataagaaagtattttcaac acgcggaacacttggcagaaaaactgatttcagaagtttatgctcctttctattttccttttgacgaggatgagaaagag tacacgcacgcgcgcaattactggtacgcgttagagaacgagtacacgtatagggcattgttaaaaaaccctttaaacac tcttctactttgtgttatcttcgaggatttagagggaactctaccaaccaacaggacgcagctttacgtggagattgttc tcttaattttgagacgttatgaaagcaagaacggcttatcaaatagaggtaaagaccttttattagtttacaagaaggaa ctgatgatgctaggagaaattgcgttagactctttgcgtaaacaagaactgtatttcgatgaacacaaaggggacatcaa ggaaagtttgttgatgaagtttggctttctgtcgatccagtctggtggtagcaagagagctccttgtgaccgttacgggt tttttcataagagttttcaagagttctttgcgggttacttccttgctttttctgccattgataatgttactaactcacac tcagtactgaccgatgagagatacgtgaaagaactatctcatgttcttaaattcatgagtggaatcctagctcagcgatc ggaagaaactgcagtatcaattgtagaaagtattgcgtcagttgtaagtgagacaggagtcacatcccctagggtcgatt tttacttaggtgttgctaacatcttaattgaggaatgcaaaacttgttcagaagacctttacacaaaagtggttcgtacc tttggtgagaggcttcagttggttgacgtggtagtgaggtcttcctcctttccatggaacagtggatttactgaaacgtt tctccaggccctcgcctttaactccaccgttttaagcctgggcttgacggagggggagtttatcaatgtgctctctcggg ccctcaaagtaaacacctctctttcttctttggatttggctgggattaccatcggtaatgannnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaactcc tctctttcttggaatttgtctcattttcccattagtgatttggtagcaaattcacttacataggccctcagagtaaatac cacttcttcttctttgaatatgagtttcaattttattggtgatgagtaaacacccctctttcttctttcgatttcttgga atgttttaaaacaatgtgggacctatggtgacacagtagttcaaaaacgagtgccaatgtttcattgaacaggtgtaaac attgaaatttataatcattccattggtgatgagggagcaaaatcatttgcgcaggccctcagagtaaatacctctttttc tttttttgatttgtttagcatttccattggtgacgagggaggaacttcacttgctcaggccctaacagtgaatacctctg tttcttctttgcatctcgattattattccagtgtttattcatgatttcgaggcctttgagaggaagcagctgtctttcgt ctttggattcttgaaaggttctaaaacaatgtgtgacttaaggtaatattcaaaaatgagtgccaatgtttcatcgaata cgaggaaacaatttgcatgcattgacgtcttctttcttcctggttttgaagcatagacggattaggagtggattaatcgt gcaggtttcggtcacccaaaaagcatgcaatacggagagaagttggcggttaagatttttcagaaattggtgagaaacgc gcgagctaatatattttcaaagatacgtgataggataagcaaacagtttgctttttaccgctgtatcattgtagatacat gtgacctaaatgcgggcaggtgattgggttctcagctcacggagtagttattatgaatgtgtgacttaacacacgtttct attaacatttttaaatcacacaaaatttaaaatacgaaagaaaagtaccgatcgcctttagaattcaaggcctttggtgt tgagtttctcattgtcgaaatgatgtatttgcttaaagccttaggaaaaggttcatgttgaattttgaaactttgaagcg agatgatcacagaatttcaaccatccgcttgttctttacccagttattgagaagacgagaagcgctaaatcgctataaaa aacaaccgagctttgaaaatttaaccgtcgaaatttatgaaaaagtatgaaatttaagggttgaataaacaagcccgtaa ccaggattttatatgggggggtgctaactaggccaaagtggaccaaacgtccgnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnggagagcagtaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggagactagtgagc agcacataggaactgattttagtttctttgtttattctccgaccggtttcgtctgatcaaacagacttcatcagggattc taacaagatgtataaggggaactagttttatacattaatttatggtacaaaagcgcgttccagtgacggtgtgaacagca aaaacgtacaggatataacgtagatcctgcgtagaaaagttgtaagatttgtaaaatttaattttggggctcaagattta acgtcaaacattacaaattttacaccttttctacgcaggatttacgttagatctcgcgcgnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnngttcaaaaaaaatacacaaaaaagttagtttgcatcttcgggcgttcatgcgc ctgtacaaacagagaatggccgtttttttatgaaataaaagtcgtcaagacgaatttaacgtctgagaccttaaagccgg ctggtataaaaaaaagacgcaaaaacgaagacgaccttacagaagaaaacgcggttttcctttaagaaggctgggttttt cccaagacaccatacccgagatctccaccacacgaacatcgggttctttcttgatagcttcaaaaatatgaacattagcg aaattcttagagtctccaaaagcgaatttcatttcgatcgtctgcaggaatcgatgcaaattctttaagttcaaagttca ctccactctcttccccgagactcctttgagttcttcttggccgccgtgttgattgaagtttagtctcaatgtcggtgcta gaaactcagtcgtcccagtcgtgtctggacgagtaagggctaaattcgtctcattcatggtgtcccgcttttatactaga cggatttaacgcctgggacgttcaagtcgtctgttaagtgcgtcgtcgagacgcacttaaggtaattcctcacaattgca ttgcgcatcctttctgtgcataatttatgttgtcatttagcgcgcgctcgtgctctcgcacattaaaaacatggcggatt tgtcttgatattgagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnngtagggagccaccttaaatgcatctgtcgtgttcaccatttttacacgttctggccccggttgctc gaaagatggttaactcttaaccaatggttaaaccccataaccagtggttaaaaattaaccgagagttagtttcggttgct cgaacgccggttagtattaacaataggttaaatttcttctaaccacgggttaaatttaacgtacctcgctacgagtgtta acttgttaaccattggttaaaatgacgtgttgttgctaaatcagtgaagcaacatggcggttgatttgctttttcacggt gtgctacttaggcgtaaaagaaattttaacctcaatgagaacttactcgacggactctctgaagccgaggttaagtcacg ctacagattttcgcgtaattctattcagttcatcaccgacacgcttgctgccgacctcgaaagaccaaccggaagaaacc gtgcattgaaaccccaggaacaggttcttgttgctcttcgttttttcgcaagtggtagttttttggaggtggtgggtgac acagtcggtggcattcccaaatgcaccgtttcgagaatcgtcagtagggtgtcaacagctcttgttcgaaaacagcacga gttcatacgatggccatcaacagctgccgaaaggcaagaaagaaagcaaggcgaagcgatatgtgatcacaaagatgagt atcgggttttaattgttgacatttattgattgaaagttatttcttaattaaaaaaagtgtgtgtatttcacacaggatag caatacatctcaattcttttattgctcttatgatattatttaatagagtcacgcaagtttaacggttcacgtgatcctct agtgtctggcctgccggctgaattgtcaacaacaaaaatggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacatagtctctccaacgaaagcgaaagacacaataatgata aagatgatcaagtttacttcgtttcgttgttaatatgtcatgaattcgcaggaaacgatggcttctggcaaataagaaat tcttcttttaatagcagtattgtataatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnaaaaccccctctctggctaacagttgagaggtacataggaatctattttctaatcagccttctttccaatgcagaa ctgttgagtttatcgaaagagacatttacgaccatttgcattaagcaatgccctttctggacattgcaacctagtaccaa cctttgtatttatttttaattcagtgtgcaaaaccttgcatctctcatcaaatatttaaattttaatttgcattgtgtta tatttaactgtaggcctcttcaccaatgtggttgccaagtggcctggctctacacatgacagttttgttttcacaaattc attgatacatgaaaggcttgaaagcaaccatgcatttgaagatgggtatctattgggtgacagtggttatccatgcaagc catttctaatgacaccgtatccaaatactgcaaatgcaaaagaggaggcatttaacaaggcccactgcaagactagagtg gccattgaacaaacctttggtcgatggaaacggcgcttccacttacttcattctgagtgccgtatgaaacctgaaaaggt gtgcactcttattggtgcttgtgcagtcttgcacaacatttctatcagactcaatgatgatattgatgatgatccttttg atgatgaccagcctgagcttgttccatatcatgggcctgatcaaggcaggttactacgagatcacatttgtaacacattt ttctaaatcctcttatagtttcacataaaaaaccaaaaagtatttagtaatagagcacagtatcaact |
Protein
Protein ID | aug_v2a.14658.t1 |
---|---|
Definition | - |
>aug_v2a.14658.t1 MTGIFTPHECCEQPLIVLIEGEPGMGKTTYCQKLVFDWASKQCREWDESFPRIDVLLFLRCRGIKSTIWDAIEDQILPDE IKPEEKEMFFQFLRENPSKVLLVLDGLDEADPQKLEMYLKLIQNKQLPGCYIVLTSRHEAGSKVKPYTDTLLEIVGFISD DAKCFIRKYFQHAEHLAEKLISEVYAPFYFPFDEDEKEYTHARNYWYALENEYTYRALLKNPLNTLLLCVIFEDLEGTLP TNRTQLYVEIVLLILRRYESKNGLSNRGKDLLLVYKKELMMLGEIALDSLRKQELYFDEHKGDIKESLLMKFGFLSIQSG GSKRAPCDRYGFFHKSFQEFFAGYFLAFSAIDNVTNSHSVLTDERYVKELSHVLKFMSGILAQRSEETAVSIVESIASVV SETGVTSPRVDFYLGVANILIEECKTCSEDLYTKVVRTFGERLQLVDVVVRSSSFPWNSGFTETFLQALAFNSTVLSLGL TEGEFINVLSRALKVNTSLSSLDLAGITIGLFTNVVAKWPGSTHDSFVFTNSLIHERLESNHAFEDGYLLGDSGYPCKPF LMTPYPNTANAKEEAFNKAHCKTRVAIEQTFGRWKRRFHLLHSECRMKPEKVCTLIGACAVLHNISIRLNDDIDDDPFDD DQPELVPYHGPDQGRLLRDHICNTFF* |