Gene
Gene Model ID | aug_v2a.15033 |
---|---|
Locus | scaf6336 : 114 ... 12945 : - |
To GenomeBrowser | scaf6336:114..12945 |
Genes list of scaffold | scaf6336 |
Manual annotation
Study field | Collagen |
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Gene name | Collagen Domain Containing Protein12 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.15033.t1 | gi|471362782|ref|XP_004371950.1| | PREDICTED: collagen alpha-2(IX) chain [Trichechus manatus latirostris] | 6.0e-33 |
aug_v2a.15033.t1 | gi|507655066|ref|XP_004704992.1| | PREDICTED: collagen alpha-2(IX) chain [Echinops telfairi] | 3.0e-31 |
Transcript
Transcript ID | aug_v2a.15033.t1 |
---|---|
Definition | - |
>aug_v2a.15033.t1 gaccagcagttatagtgagcatcaggacagctgaagctgcagcacgggtcggtagggaagtggaattaagttgtgtttcc gatggcgaccctacaccaaatgtcacttggtacagaccagatggcagccttataaacacaataacaacaatgcaaaacaa aatattagtagtaatggacaacaaagaggatttcggtcaatacaggtgcacggcggacaatggcttagggcctcccgtcg agagactgattgaaggtaagtgttaaaaaaaacgagattctaagcagcaaagtataggagcttaagaaacgctaacttat ggtaaaaaaaagtccagactttatagaagtataactgcaacgtcttaagaactccacgctctcagtttttgcgcgttact tcttgcactggatataactgaaacggttaaaaggtgaacgcgagttaaaaaaaataagtgtagtacattatttgtttctt ttttcttcctttcagatggatataaattgaaatccatctaagaggaaaaaaaagtcagatttgttaaagatttacatgag tcattgtgaaagatactcatgaaacgttctctctccgcctaatgagacaacattgttaaatctatatttttttccgtttc atagttaaggaattggaggaactgaagagagtggtaagattaagttgacgtcctaagcttagctgcgcactgaaataaat tataagtcattaagtagataatagtttgattctcgttaggcgttgaccgcaaatcgatgtgactcttcgtttgtatttcg ggtttccgtagattggacaaccgggggaccctggaccaaaaggagaaaaggtaagaaataagcatcttttaatgacacaa ggatataaaagaagtccctaaagatccatcgtggatcgcgccattaattgacagctctggaactttcaccagctgagtga tttgcacagtagcgaacgcatgcaaaaaaaaagttatttattgaatctttttcgtgtcctgtttgacgacacatacaaca acttaactttatttatagtcgcatcaattggagcttgttagggtccttgcacgtacagctaatgtgtcgagttaacaaat gtaatgattgggtgtagagtaagagaaatctagttaacaatattggctaagaaataagcagagtatttacacaaaagttg catgaaagtaattaaaatgaatgacatgatatactgctaaataatgaacaaagatagtgttatgaaaactagaagattga acaaaatatatgtacagagtgacaaacaattacaagcatctaatgttatttttctaatttgtgatacaaaatttctaata gtggcagcagttcttaggttatccagcaaggaattccacatttttggaccgtacacagtactgtttcgcagtccatactt aggcatgtttgctcttgatagagtcagcattattctatcacgcagattatatttatctttactggcgaggcgtgaacatc tttgaggaaataaaataacaacggttaccattgatcttaaaaacagacagaaatgttactttgtagggtaataaaggtgc acctggcgcatctggtcctagaggggaacgtggagtaaaggtaagctcattttcgtcaaaatcacatttattgtcagaca acagttgagtctaccttagactatagagacttaagtccacgatggcgcttacgtcaacgaaaaagtcgcgcggaggatta agccgcagcgacagctctgcttggaattgacgaaaaaaaggcggtaacggccacgaccaatcattgatatgatcggttga atgaagaaaaataatcgtgccgtacgtgcagcacgtatttaattatacttctcacgtaatatgcaaaatcaacgcgtgct tcacgtgcggcacgaatgtagcgcatttctctaaataaagtgtgctgcaaacaaaacgcgtgtcaacagcgataaaattg tcattctttattctttcgttttnnnnnaaattttattttattttgtttttgcatgtgtggaataaacatatttaggatta aaaagtacctttttttcgccaaaaaaactgtgtgccttttcgcccctaagtccccctttagccaaaattagcatgtttga agcgtgacagaacacgttagttattgttctagagaaatttttagttctcaatccctctctttcatataccaagccagcga aagacaaaataaaaattttcgtgttatatacacttaaaatcgtgaaagattcggcctgaatccttggctcgtattgtaag aacacgaccaatttggaatcagagagtcctcgttttgaacttttgaaccatttcggcctttttcattccattctacgcct caagtaaaccgaagtcgggaacccatcagctggagcctgcatctcccatacaagcccttggagtcaacccttttcctagt agatttataaatagaacgattccgtggggaagtttcgcgcgctgatagaggaaagagccaatgaaaatagaaaaatgaca gcgggcagcaagcgcattcatgcaattcaagcgcattacaaaagaaaatgattatatttataaatctactcgggaaaggg ttaactcaagaaattaatagagatggaggctccatctgacgggctcctgccgaagtatgctacgaggaagtgatttttat tgcattgttgaaatagacttgaaccccaattgacttactaattttattcaattcatcaggggaatcccggaaatcgtggt ccgaaaggagaacccggacctccagggccaccgggaccaccggggccaattctcctaaattttaacaggactggaaggcc agatggaccccctccggggttggtaagtagcaaaggtcatgaactttgcttttctgtttgcctcatgtgtttgcttaaac agtgaagtacagcaactgaaaggtcttgttaccacaacactcttaaatgtttcacaagaaaaacacgcaaggcagtgata aacaatacctttcaaataattcgccggacttgacgtttcgtatgttgcaacatatattttcaaaagtgtacgtttttttt tttttgaaaacaatagaaacagcgagagatctgggtgcggcttaaagtagcagcgacatataaataaagtgacaacttgt cagtggttagattagtacagtaaacaaccgcatgaaagaacacacgatttctgaggtcaggcagattgagtttatattta taggatgcttagtgataaatcagcctcaaaatgttcctaaaacgttcttaaattttatttaatattactatacaaaacat gttgctgtgtgttatttttcttatgaaacctccgatggccgaagaaaagagtctccttgatactcttataagtgtgttaa aggaaacacaagtgtttttgagaaaccaaagagggagttatgaaagcacagcttacttaaccttgaacaaatattcattt ttgaaatcggcaccctgaatccatatagaatcaatgaacgcttctcgtgtatttattgatgtcatgtttccaccaatgac atagcttctgtgctccgtatacaaaccaaacacaacccccaacccgtacattcggtctgactaagactgagtaagggcta accctcgaaacatcagcttcgctgtcttgtaacggttgtaatgttagccttatcagcttgtttgatgagtaattttcggc gtattctttctcaccaacactgcaccacggttcatttagaaatttagctctcaggattggcgcgattcttgactcatctc ttcagtaaccttgtcatttcagattacaagtggaagctctaagggaccaaacgttggattcattgaggtcaagggttctc caggagacccggtaaaactgtaatcattgaatcagtgtcttcgtagaaaatgtctatgagccatttatgactacaacgac tgaaaccctagctagattaatccaagagtagcagacacgtttgaacctacctacttacaaaccaaggaggaattgtcctt gggttttcaaccaaagcttaaaatatgatggctagggcatcttcagtaaaccagtaaaattcaaacgtcgtgtggtgttt acgtcaattgcgcctttggagtaacttggtccaaggaatataaagtagttctttgacagtctttctttatatttagggcc cacaaggaagtatgggagtccctggcttcagaggacctgacgtgagttaagttttgttgctatgaattcagtttactctt atcattgatttgcaagaacaaggaattgtattgatccaaaactttctttttttttcgataagacttttttttcaattcat caatgaggtttctaatagactctatttctttttctcaagggtgatccaggaccaaggggagagcttggacctactggtaa aaacggcgaccaggtaacgaaagaaaaaaatgcaaacgtggagagattattatcgtactgagtgcgatcaaatcaaggaa ggggttgatgcccgccttgccccatttaaggtcagccaaggtcacagtcttctgtgagggaattgtgtaaggtcatcaga cagtgttcgaccaaatttcgggattgtttaatgaattttacattatggttcggacataatgatcgaacaataaatcaatg tctaaacacaggtttggatccaacatattagtttctggtttgctgcactctgtttcgttttctaggaagcaggttttaag ggacaaattttttttattaatggtctatccggaaagaacaacatgcttatatttgatatttggagacgaagaggtcgtgt acttcgcgaattggccggtacagctcccaatgggcttgcacagagcaagagcattactccttccctcttaggcaacgaaa ctgccatcattacaatctacgtgctcttttgttttcacagggcgaacccggttctccaggccctccgggagtaagaggtc gtgatggagaagacgtaagtcattttcgggttcactgattatccacgtcatttaagttctcaaaacgcctatagaaatta ttcttgaaaaaaaattgttctttcttatttattgtttcagggaatgcctggtcttcttggtgaccgtggcgaggatggac ccataggagaagcggtaaaattacatgcagttcaatgaaaggacgaaatttcatgaatcaacaaaaactcattcgacgct tttattccgaagaatccaccgaccctttagacgtctgtcagtaactaaaatttggtgtcaaacttccaacgtgaaaagtt aaagaagctgacggttcgagcgttagccctttcgtcagagcgatagtatgtcagtcagnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn 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nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnngtgtattccaccttccaagtgatcgttaattagcttgcacgtactcattaattagc tactaattgcacgaacttattagcttgcaatgtccttataaacgattcttcaacgcagtgtccggtggaagtggactagc taacactattctctttcaccatcgttcaatatttcaacgcgtttgctctttgtgtggccattcgtccgtaagttcgccaa tagctttcaataacttattccagctttagattttctcatagttttaaaggatgcgtatgaaacttccgcgtttaatccat tgctgggtttaccggtttacaagtaacgatgcccggcaactatatgtcttattacacaacggtttcaatatgtggtaatt tcctctattgcttggaagtgttcaattttggcgattacaatcgttccttaacctccctctgcggtttccatatcatcgca ccgatcgctcgaaatcagtagtgctgtatcagagcgctcacgatcattccataatcacgatcacggtgactatcactcca tcgttcatttcacataatcgatccaatcgctggcattggagtatcagcgaccatgatcgccttgatagagcacggtttca agcaatcagggcgattttatggaaaccaggctttcttctcatatcatgtattcttcctcacttgcagggtttcccagggg agacaggagaacctgggccccctggagttgctggaccaaaaggcgaccaagggccattgggtattattggactaaggggg caaaacggcgaaattggaccaaccggaccagttggtcccaagggagacaaaggaagagcgggtgtcccgggtgaacaggg aagtcccggattgaaaggagtaacggtagggaatgtcagaaattttgtagttttattgaacagatgacatcactgaaaat gggacatcggtaatgtgatttattgttcttttggtagggttcagttggaaatgctggacttcaaggtgaacgaggcgcaa acggtgccccggtgagtcataggaaacaaactacttattgatatatttcaatgtaggtagtatgtgtgtggagaactttt agcacgttaaatggcagtttttcattgacgttgtgccagagaggcctcacttgccaggaaaacgcagttagcagagtaaa agtaaatgtgagaaagagttttcaaatctacaatagttttgagttccagaccattcaagtcgatcattaccaaagacatc tcggtcagttttcacctcttttgtccattgcttcgagacggaaaaacgaaaacacttgcgacagcgcaaagttatgttta aaagttctaatcaaaatgacagctaaggccaaaggcttgctacagttcgttttgacactccgtaattatgttctaatcgc aatccaattttaaatgcatgaagtactaagcaagacgcgttaactaagaggtttctggctgggcgcttcaatttcactct tcatggaaaaaattaaaggatgtaaaggaagacaatgttgatctgacgtgctttagttcagtaagtgtgagacagtcata gagaatataaagagtctttaggataaatattattacttcaatgtttcagggaactgatggcagaccaggcgaaaaaggaa gagctggagagagggtatgtcatgtgaattcttataataactacgtgtaacaagctgaatatacacgtataaccaaaaat tcaatgttgttagtgcactgttgtgatgtaggtgacaggttgcttaaattcattgcgtcacaaccttgctccataatctt ttatataataagctcagttatccacgcattctgattggttctcactctattggatgacagacgcatagatgatgacagcg ctcaattcaagtttgacagttgcgtgattctttgaaccaatcacaattacaaaatgtgaaccaatcacaattacaaaatg tggtaagaacatcagtgacacactgggctgcgcctcgtgtaccacttttttgctcttaccacattttgacgtcatctgtg atctattactgaacagacgcacggcaacatggaatctatttagctgatgacgcaatgaaaccatctggagaaactaaaac tcgataaaataatttcagtgttctaaaacaattgattcatggttagcgtgagttcatagggttattgatgcgcttgggaa gttgcttggaactcgagaacctaatatcccaatctgctatcgcctctggcgacccttacgcttctctcgtttttatcaac cgtccgcgtgcatccataagtccgcggatgctaaccatgaaccagttgttagttatttaaatccacattatggtggagta gttaccacagtgcacttcctaacattggttatgttacttttataaagggaaagcctggactcccaggcccacgtggaagt cttggagctaaagggaatcaggtaagtgtcatgacgtggggtttcgttgtcggcgggatagctttgaaggtggttagtta aagtgacaatcgatgaacttggtttttgtttaagttgaaaccgtttgactcttgacatgtaacgggttgaaaccctctga tttggtcatgaatcacgatcgcagactccataatcaaaacaaaagcgcgtgctgtcactcaccgcgatatttgannnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnttcagcgtctctttgtagcgggttcgtttgaactcgatcggagcgaaaaaccaaagatga gttatttcattcagggaaatggtggagcgttggtgttagcgatgacaaactgctttataggctagtcaacatgaaaccct tttaatcgattgaaagtctggaacatgctccatgaggtggaatttgtaacttactagggaaagggaacataagaacaact gcagaatggtgctccaatttattgaatgaatagtgagaatggcatgccgtaaaggtatacgtactgaccttctttgtgat aatacgtcttttacttgatctcgatctcgtaaaacagggtctggaaggggggatcctgatcccgcattcccgcccctttt tcgagagaatcccgcatcccgcacgtttttcatcagcttcccgaatcccgcttttctttcccagaaaaatacattctaag tggtaaaagtgttgacaagcctgcatgactcctgcatttcgcagatgaataacttataaagccttcatagtggtataatc ccgaatcccgaaaatacccttccagaccctgttaaaacactccgatcagagcagtgaatatccgttgttttcctcaggga tccagagggcgccgtggtcgtcgaggtttacccggtgacattggaccaaaggtaaagataatcgttatttcgtctggatt caagaagcagaaggttcagctctttctctgttgttacaaatagggacctgaaggacagcccggttttccaggagcgcctg gtttacaagggccaaaggtaacgtataaatttagtctcagtagttgtgttgcatttacacatacagagtttaagaaatca cgacaaaagcagcgacaaggacgtcacaaagttgctcatttcacaaagaaaaacaatagttctgcacgcttagcgcgtga aatttcaccttttcttctttcgacctccaaacgtctcataccacgagctaatgagtaggagcatgcaactgcactatatt cctgtcacggcgttttcgtagaccgatttatttttagatcgtatttccctggagtgagactcccgtgggagtaccatgac caatcacaagacactaattgacgtcactgcgccactggaccggaacagcctttctttcacaaaagaaaaggtgtactaaa aatagatcagtctgtaaaagtgccgtgacataggcttactatgggagttgcatgctcctactcatcggctccagctgcta gcaataattccatgatagttagaacacatttaaaagtaacacgacgaggaaaaatcgagaaatgattgctgaatggcaaa tttacattttcaggcgactttttcgctgtcgtcgatgtagtctttggttaagcttcctgttgttcctcttgtcaagttat gcttcacaacattttgattggccgttatcctttgttttgtaagggacatgatggattacacgggttggatggaattcctg gagaaaagggagatcaggtaaaagctaacggcccagtttcctggcctaagcttataaaagttctctctttcgtcttgtga taaatgtgtttgttacttctagtcaattttgtggggcccattctaatatcatggaatgagcttttactttgttgctaaaa agataaaataattatcctgtatttatttgaactccttgatttttctaattcattttgaaattcccgagttgtaaactgaa ttgggaaaattgaccaggctgtaggcgaacttttaatacggacttcggctattacatgccagtcatgcggtaagatcgaa aggaagtatgtcagactttgatttctcgccttccctttgggtttgaaagctaagaggttcttcatttgcttagggtgctc ctggcaatgtcggggaaactggaaagcaaggaatgcaggtagatgcgttgtactttgattcaggtgataagtagttttat aaaagccaattaagtcatcttacgcacgctaaccttgacccaattgtttaaaagcttccacattctttgatcaaattttt gtggcttcattacgtcatcagcgtgcttcacgatcttagggatgcacgctgatgaccaaatgaagccaaggaaatgtttg tctgtaaactttcaatgggcctggagaaactataatttgataaaataatgtcgaagttcttaaacaattgggtcaaggtt agtgtgtgtctgttgagttatggatgcatgcgggaggttgttaagcacgagagagatgtaagcgtctttggagacgatgg cctagtgcgaccttagattctcgagtgcttagcaacgttaaggaccggaaagttaaggatatatagtaaattgcattaat atgagcgggagttcattatgtttgcgatggagggccgaatttgaattttgcattgcctcgttgcaacagggagcccgtgg acaaccaggaaaacctggggcagctggaagtaaaggaccagaggtgagcattaacttcaaaaattaaaagctagaatatt acaagcacgttaagtgtttacaaatattgttaaggggtaactgcagaaattttcaatttgcacaaaatatgtacttgcga aaatttgtattgatattaatgctatatacattatcaggtcgacaacaatcttggaatttccattacgctaattaattccg aagctttatttctggaatccacttaccacaaattgagaacctattttcttttgctttttgtctgcagggttttccaggtg aggatggtagacctggaagagcaggcgatccg |
Protein
Protein ID | aug_v2a.15033.t1 |
---|---|
Definition | - |
>aug_v2a.15033.t1 PAVIVSIRTAEAAARVGREVELSCVSDGDPTPNVTWYRPDGSLINTITTMQNKILVVMDNKEDFGQYRCTADNGLGPPVE RLIEVKELEELKRVIGQPGDPGPKGEKGNKGAPGASGPRGERGVKGNPGNRGPKGEPGPPGPPGPPGPILLNFNRTGRPD GPPPGLITSGSSKGPNVGFIEVKGSPGDPGPQGSMGVPGFRGPDGDPGPRGELGPTGKNGDQGEPGSPGPPGVRGRDGED GMPGLLGDRGEDGPIGEAGFPGETGEPGPPGVAGPKGDQGPLGIIGLRGQNGEIGPTGPVGPKGDKGRAGVPGEQGSPGL KGVTGSVGNAGLQGERGANGAPGTDGRPGEKGRAGERGKPGLPGPRGSLGAKGNQGSRGRRGRRGLPGDIGPKGPEGQPG FPGAPGLQGPKGHDGLHGLDGIPGEKGDQGAPGNVGETGKQGMQGARGQPGKPGAAGSKGPEGFPGEDGRPGRAGDP |