Gene
Gene Model ID | aug_v2a.16822 |
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Locus | scaf8061 : 13436 ... 17525 : - |
To GenomeBrowser | scaf8061:13436..17525 |
Genes list of scaffold | scaf8061 |
Manual annotation
Study field | Retrovirus |
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Gene name | Adi-Retrovirus-related 20-12 |
Description | DNA sequence of this gene model showed similarity with that of Adi-Retrovirus-related 20-1. This gene model contains Rapsyn_N, TPR_1, TPR_2 and DUF2977 domains. |
mRNA evidence |
Annotation by Blast2GO
Annotation | GO |
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tetratricopeptide repeat protein 28 | GO:0015630 GO:0044430 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.16822.t1 | gi|545869384|ref|XP_005657394.1| | PREDICTED: tetratricopeptide repeat protein 28 [Sus scrofa] | 0.0 |
Transcript
Transcript ID | aug_v2a.16822.t1 |
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Definition | - |
>aug_v2a.16822.t1 cggcagttaagggttaagagtagagtaaggagagaggaattttgtaagagaaactccaaatacaaatgatatcagtacca cagtcccagtgtggtgcttttgaagtaattcagagtctcgacacgttttgcaaggcgagccgctctacacaatatatatt agagctatcgtaaaaatgtaaaaggcaagcaacattcagccgactgaagggtttctaatgtatagaaagaaacagtaata atgagtcgaaaaacagaagctgaatctggaattgctgcaattaaaaacaaaatttgatcgatgttggaaagataacatta aaacaaaaaactctatgacatctgttgacaacatttcctatagcatgcgttcctccagtcatttttttctttcctttttg ctaattaattattcatttacttgtttccttttccaaaaagaaatagataggcaagacagaagtggaaaagtctatgtcaa acagagtagagatttgcctataatgggtgagtaccttaaaaaacatttcacaactgcaatagaaaatggtgatcggagcc gagaaggagaagcttatgggactctcggtaatgcctaccagttactgggtaactatcaaaactccattgagtatcatgaa aaatgtttaaaaattgcaatacaaattggtgatcgagggggagaagaaggagcttatggaagtctcggtaatgcttacca gtcactgggtgactatcgaacagccattgagtatcatgaaaaacatttgaaaattgcaatagaaattggtgatcgggata gtgagagaggagcctatggaaatctcgctaatgcttacaactcactgggtgactatcgaaaagccattgagtatcatgaa caacatttgaaaattgcaatagaaactggtgatcagggcggagagggaggagcctatgaaagtctcggtaatgcttacga ctcactgggtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnngagcctatggaaatctcggtaatgcttacaagtcactgggttactatcgaa aagccatcgagtatcatgaaaaacatttaaaaattgcaatagaaattggtgatcggggcggagaagcaggagcctatgga aatctgggtgttgattaccggtcactgtgtgactatctaatagccattaagtgtcaagaaaaacagttgaaaattgcaaa agaaattggcgatcggagcggagaaggagcagcttatggaaatctcggtaattcgtacgactcactgggtaactatcaaa aagccattaattatcataaaaacaattgaaaattgcaatagaacttggtgatcggggcaaacaaggaacaggctatggaa gtctgggtaacgcttattactcactgcgtgactatcgaaaagccattaagtgccaagaaaaacatttgaaaattgcaata gaaattggtaatcgggggggacaaggggggagctatggaagtttcggtaatgcttaccagtcattgggtgactctcgaaa ggccatcgagtatcatgaaaaacgtttgaaaattgcaatagaaattggtgatcggggtggagaaggaagaggctatggaa atctcagtattgcttacatgtcactgggtcactatcgaaaggccattgagtatgtagaaaagcagttgaaaattgcaata gaaattggtgatcgggagggagagggaagaggctttggaagtctcggtgatgcttaccagtcactgggtgactatcgaaa ggccattgaatatcacgaaagacagttgaaaattgcaataaaaattggtgaccggggaggagaaggaaaaggctatggaa gtctcggtgatgcttacgagtcactgggtgactatagaaaagccatcgagtatcacgaaaaaagtttgaaaattgcaaga gaaattggtgatcaggctggagaaggaacagcttatcacagcattggaattcaatttctttgtcttgaagaatttgaaaa cgcggtgcataattttgtttccgctgtggatgtcttcaatgctttgagatctctattgaagtctgaagataactggaaaa tacactttcgtggggtgtacgaagcgacgtacactgctttgtggatgtcgttgctaacaattaaaaagatcgatgaagct ttgttcgcagctgaacaaggacgagcgcagactttgtctgataatttgttgcttcaatataaacttgatccatctttatc atctgccacaattgacaccaaagagacaatatctcgcctcttcacaaagcttttctcaccaactctttttctagcaattg atgactttaggaccaacatctggtttctgagaaaaggagagaaaattatatttcgtgaagggacgctggagggtgataga agagagaaagatcctttactcgccctactgaaatcatctttacagagaatcggagctgaagatacaaaaagatgtgaaga tcgcacatttgatgaacttgacaatgaatgctcgtttagaatagaaaagcggggtgaaggagttggaaaaccaccatcgc cgcctttagataatccttttcagccattttatgatgcagttattgatccaatttttgacatgcttgaacctcaagacgac gagttggtcattgtttctgatggtacgctgtgctttatcccatgggccgcagttattgaatcgattaggattcgtattgc tcaatcactgacaagttatcaattgatcttaagtgcacccgaaggacatcacaagaagacaggggcgcttttggtcggaa atccctgcttaaaagagttgaagaaacccttagatgacttaccatgtgctcaagaagaagtagaaatgattgcatcaatt ctcaagaccatacctctgacagggatacatgcaacaaaagctgaagtgatgaaacggatgtcgtcagttgccctaattca tattgctgcccacggaaacgagcgcactggggaaattgctttgtctccgaaccctggatggtcttcaaagttccctcaaa gaaaggattacattttaaaaatgtccgatgtgcaagctgccaatcttcgagctcgtcttgtggtgctaagttgctgtcac agtggacgaggtagggtcttgaagggtgagggtgtggttggtatcgcacgtgcctttttggcagctggtgctcgttctgt gctggtgtccctgtgggcaatagatgacgaagctaccttggagttcatgaaaattttctaccaacacctgaaggaaggaa aaactgccagtgctgccgttcagcaatccatgaaatttcttcgtgaatctgagcagttttatgagatgaagtactgggct ccattccaacttatcggagatgacgtcaagattgaatttgaggcggatgatgacgtcaaaaaatgagattaataatttgt ttcgttcttt |
Protein
Protein ID | aug_v2a.16822.t1 |
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Definition | - |
>aug_v2a.16822.t1 MGEYLKKHFTTAIENGDRSREGEAYGTLGNAYQLLGNYQNSIEYHEKCLKIAIQIGDRGGEEGAYGSLGNAYQSLGDYRT AIEYHEKHLKIAIEIGDRDSERGAYGNLANAYNSLGDYRKAIEYHEQHLKIAIETGDQGGEGGAYESLELGDRGKQGTGY GSLGNAYYSLRDYRKAIKCQEKHLKIAIEIGNRGGQGGSYGSFGNAYQSLGDSRKAIEYHEKRLKIAIEIGDRGGEGRGY GNLSIAYMSLGHYRKAIEYVEKQLKIAIEIGDREGEGRGFGSLGDAYQSLGDYRKAIEYHERQLKIAIKIGDRGGEGKGY GSLGDAYESLGDYRKAIEYHEKSLKIAREIGDQAGEGTAYHSIGIQFLCLEEFENAVHNFVSAVDVFNALRSLLKSEDNW KIHFRGVYEATYTALWMSLLTIKKIDEALFAAEQGRAQTLSDNLLLQYKLDPSLSSATIDTKETISRLFTKLFSPTLFLA IDDFRTNIWFLRKGEKIIFREGTLEGDRREKDPLLALLKSSLQRIGAEDTKRCEDRTFDELDNECSFRIEKRGEGVGKPP SPPLDNPFQPFYDAVIDPIFDMLEPQDDELVIVSDGTLCFIPWAAVIESIRIRIAQSLTSYQLILSAPEGHHKKTGALLV GNPCLKELKKPLDDLPCAQEEVEMIASILKTIPLTGIHATKAEVMKRMSSVALIHIAAHGNERTGEIALSPNPGWSSKFP QRKDYILKMSDVQAANLRARLVVLSCCHSGRGRVLKGEGVVGIARAFLAAGARSVLVSLWAIDDEATLEFMKIFYQHLKE GKTASAAVQQSMKFLRESEQFYEMKYWAPFQLIGDDVKIEFEADDDVKK* |