Gene
Gene Model ID | aug_v2a.19002 |
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Locus | scaf10948 : 1 ... 3785 : - |
To GenomeBrowser | scaf10948:1..3785 |
Genes list of scaffold | scaf10948 |
Manual annotation
Study field | Retrovirus |
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Gene name | Adi-Retrovirus-related 62 |
Description | This gene model contains rve and RVT_2 domains. |
mRNA evidence |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.19002.t1 | gi|339241765|ref|XP_003376808.1| | retrovirus-related Pol polyprotein from transposon TNT 1-94 [Trichinella spiralis] | 0.0 |
aug_v2a.19002.t1 | gi|546320576|ref|XP_005717319.1| | RNA-dependent DNA polymerase [Chondrus crispus] | 0.0 |
Transcript
Transcript ID | aug_v2a.19002.t1 |
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Definition | - |
>aug_v2a.19002.t1 tcgcttccactgcgtaacaagttggttttcggcgatcgattcccggtattttgtgagctgagcagcctggccgcagaaat tggtttgcctgtgtaaagaaagaaaaaaaatggctacagattcaaagaacgttgcgttggttcctctgaatggcaaaaat tattcaacgtggaaagtacagtgccgaatggcactaatgagagatggattatggaacattgtcaataataaagagaaaat tcctactgaaggtgataaagatattctgaattttttgtccagaagagatcgtgcattggccacaatagtactctcagtcg acccttcgcttctctatttgattggagatccagatgatcctgtagtcgtatggaataagcttgcagatcaatttcagaaa aagacctgggcaaacaaactagctttaagacggaagttatattcgctacgtttgaaagatggagattcagtgcaagagca tgttaaggtgatgatcgagatctttgacagcctagcagcagttggtgaccccgtcaaagaagaagatcgtgtggtacacc tactagcaagtctaccagactcctatggcatgctagttacagcgctggaagcaaacgcagaagtaccaaagatggaaatt gttacggaacgtcttttgcacgaggagagcaagctcaaagagcgagctgttgaggagacaggcttggaaattaaagcgat gacaagtcaacacagggcatcaaggaagggccctaaatgctttgaatgtggaggatttggacacattcggaaaaactgtg gtaacctgtcaagtaaagctgtctctgaagggaaagaaagagagactggtgtccgtagaaacaagcacaaggcacataag gctcaagtaaaggaaatggatcctagcagctcggacagtgaagcaaccggattagtagcgagtcatgcgctaactgcagg atcaatgaaaggtgaagcagtctggatagttgactctggagcaacctgccatatgtgtaataataggaaactgtttgtga atttcaacagtttagcagaaccacggtatatcacattaggtgatggacacacggttaaagctgttggacgtggtgtcgtt ctattgagagtctcaacagatgacgtcgagacaaataagtgcaagctgcaggatgtattgtatgttccaaagctctcatt caatttgctcagcgtagtagcatcaactaaggctggaatgctagtgcaattcaccgaaggaggatgtgagatctttgatg ggaaaaacaagcttgttgccactgcaacaagagaaagtaatttatactacttaaactgttgcagtattcatgttctaatg aactctgtagctcaaaaggagtgtgtgtggcatcaaagatatggtcacctttgtgaagacggtcttaagaagttagtcaa aggcaacatggtcgatggacttgactttggcccatcaacagaattaagtttctgtgagtcatgcactgaaggcaaaatac accgtagcaagtttcctgttgagcagagcaaaagagctgatgaggtacttggtctagtccatacagatgtttgtggcaaa gtgggcacaaaatcactaagtggaggggagtattttcttaccttcattgacgacaagactcgctacgtctgggtctacac cctgaagacgaaagatgaagtgtttcaaaagttcgtagaatggaaagcgttggtagagaagtccacgtcaaaaaggctta aagtcctgcgctcagataacggcggagagtatttatcctcggagtttagggattatctgtcaagggaaggaattcgtcat gagctcaccatacctaaaacgccccaacagaatggagtagctgagagaatgaacagaacattagtagaaagtgtgagatc aatgctcattgatgcacatttaccacataagttctgggccgaagcgttatcaacagctgtgtatttaaggaatcgaagtc caacgaaagctgtggaagacaaaactccatatgaggcatggtcaggagccagacctaacgttaagcacctacgagtattt ggatgcatcgcatacgcccatgtgcccaaggatgaacgtaaaaagctggactctaagtctaggaagtgcattcttcttgg ttacggggctgaagtcaaaggatatcgactttatgatgtggaaagacgcaaagtactgcatagtcgtgacgtaatctttg acgagtcaagtagattgacaatcagtggtgaacgacagggtaaattgcagtgtgaggaggaggagaagcagcgtctagtt gagtttgagtttgattgcactccaaatgaagttgagaaggagcctaaaccagtactgagaaggtcaacacgagagagaag accacctgataactatggtgagtgggtgacagtggcagattccgaaggaaaagagcctgagaccatgaaacaagccctgt caggaccaagtaagccaaagtggcaagaagccatggaaaaggaaatggagtcacttcattgtaatgatgtgtgggaactt gtggagctacccaaagaccgaaaggcagtaggaagtaagtgggtatttaagattaagactgatgccgatggatcagtaga acgatacaaggcacgccttgtagcacaaggatatacccagaagtttggtcttgattacgatgagacattcagccctgtgg ttagattcgagtctgtaagaacggttgttgctcttgcagcacagcaaggtcttaagctacaccagatggatgtcacctgt gctttcctaaatggcgagctcgaagaagaaatatacatgaaacaacctgaagggtttgaagttaaaggcaaagaacatct tgtttgcaaattacggaggagtatatatggcctcaaacaatctccaagatgctggaacactacactgaatggaaaattgg aaaggatgggtttttctcaaacgaaaggagatccatgcatctacacagcacagcatggcgagccattcatcataggagtg tatgtcgacgacatattactagcaagtaagagcgacaagcgactggcagaagtcaaagcaacccttgcagatgagttcca catgaaagacatgggagagctgcatcacttcttgggagtgaagatcatccaaaggcatgaaactggagagatatggatgg gacaatcagtgtacacaagaaatgtcttggaaaaacttggtatgacgaactcgaagccaatgtcaacaccagttgatgtt agtactaagcttgtgaaaggtgatgacagcaagaaggttgacaaagctgaataccagtccatggtcggtagtctgcttta cctctcaacgagaacaagaccagacattgcttatgctgtaagcaatgtatccagatttaatgctgaacctacaacaaaac acatgacagctgtgaagcgtatactgcgatacctcaatggcacttgtgacctaggtctattgtacagaaaagatgagatg aacgagtgtatcgggtattcagatgccgactgggctggggacttagatgatcgcaagtccacttcagcatacatctttca catgggaggagcagcaataagctggagaagcaagagacaagcatgtgtagccctctcaacagcagaagcggagtacatgg cactagccagtgcagcacaagaagctctttggctgagacagcttctgtctgacttgaaaaacaaacctacctcaccgact ctgattcttgaagacaaccaagcag |
Protein
Protein ID | aug_v2a.19002.t1 |
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Definition | - |
>aug_v2a.19002.t1 MATDSKNVALVPLNGKNYSTWKVQCRMALMRDGLWNIVNNKEKIPTEGDKDILNFLSRRDRALATIVLSVDPSLLYLIGD PDDPVVVWNKLADQFQKKTWANKLALRRKLYSLRLKDGDSVQEHVKVMIEIFDSLAAVGDPVKEEDRVVHLLASLPDSYG MLVTALEANAEVPKMEIVTERLLHEESKLKERAVEETGLEIKAMTSQHRASRKGPKCFECGGFGHIRKNCGNLSSKAVSE GKERETGVRRNKHKAHKAQVKEMDPSSSDSEATGLVASHALTAGSMKGEAVWIVDSGATCHMCNNRKLFVNFNSLAEPRY ITLGDGHTVKAVGRGVVLLRVSTDDVETNKCKLQDVLYVPKLSFNLLSVVASTKAGMLVQFTEGGCEIFDGKNKLVATAT RESNLYYLNCCSIHVLMNSVAQKECVWHQRYGHLCEDGLKKLVKGNMVDGLDFGPSTELSFCESCTEGKIHRSKFPVEQS KRADEVLGLVHTDVCGKVGTKSLSGGEYFLTFIDDKTRYVWVYTLKTKDEVFQKFVEWKALVEKSTSKRLKVLRSDNGGE YLSSEFRDYLSREGIRHELTIPKTPQQNGVAERMNRTLVESVRSMLIDAHLPHKFWAEALSTAVYLRNRSPTKAVEDKTP YEAWSGARPNVKHLRVFGCIAYAHVPKDERKKLDSKSRKCILLGYGAEVKGYRLYDVERRKVLHSRDVIFDESSRLTISG ERQGKLQCEEEEKQRLVEFEFDCTPNEVEKEPKPVLRRSTRERRPPDNYGEWVTVADSEGKEPETMKQALSGPSKPKWQE AMEKEMESLHCNDVWELVELPKDRKAVGSKWVFKIKTDADGSVERYKARLVAQGYTQKFGLDYDETFSPVVRFESVRTVV ALAAQQGLKLHQMDVTCAFLNGELEEEIYMKQPEGFEVKGKEHLVCKLRRSIYGLKQSPRCWNTTLNGKLERMGFSQTKG DPCIYTAQHGEPFIIGVYVDDILLASKSDKRLAEVKATLADEFHMKDMGELHHFLGVKIIQRHETGEIWMGQSVYTRNVL EKLGMTNSKPMSTPVDVSTKLVKGDDSKKVDKAEYQSMVGSLLYLSTRTRPDIAYAVSNVSRFNAEPTTKHMTAVKRILR YLNGTCDLGLLYRKDEMNECIGYSDADWAGDLDDRKSTSAYIFHMGGAAISWRSKRQACVALSTAEAEYMALASAAQEAL WLRQLLSDLKNKPTSPTLILEDNQA |