Gene
Gene Model ID | aug_v2a.19791 |
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Locus | scaf11898 : 6036 ... 10129 : - |
To GenomeBrowser | scaf11898:6036..10129 |
Genes list of scaffold | scaf11898 |
Manual annotation
Study field | Retrovirus |
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Gene name | Adi-Retrovirus-related 6-2 |
Description | DNA sequence of this gene model showed similarity with that of Adi-Retrovirus-related 6-1. This gene model contains DUF1759, RVT_1 and Peptidase_A17 domains. |
mRNA evidence |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.19791.t1 | gi|542181818|ref|XP_005469028.1| | PREDICTED: uncharacterized protein LOC102076250 [Oreochromis niloticus] | 0.0 |
Transcript
Transcript ID | aug_v2a.19791.t1 |
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Definition | - |
>aug_v2a.19791.t1 tagaatgagtgacattgttgaaaaactgtgaaagataagtgtcaaagaccggaagcttgaattcagcccgtctgcatgca atcgttagtgtatgaaatataccgcctagtgtttttttagcctttgaagtgtgttgatcagtatcgagtcgagtagttgt accaatcagtttgtcagagagttgttttattcgttgagtcgagccttttggtgagcaatttgtgagttcaatcagacgta gaactagatgcctaaagactgtaccaagaagccggttaaccaattaaaccagaggacagttgaagccgatcaatgcaaga cagttgttgaggagacaaaaattgccgctaaggaaagccccgaggatcttaaccagtggattactgaagttgatggcaag atcctatatgctgatgaaagcgtcaagagcctgaaagaaacattagaagagctccgctacgaagaactacttaaaaaaca agaaaaggaagtagacttcgaacaaaaacttttcgaaacaaagatgaaattccaaacagaattacagactgcaaagaaac aagccgaagaggaaaacaagtttacagccagcggatctgagtcaggtcatggatctcctgcgaaattaccgaagcttaac atttcgcgtttcgatggaacttacgaagactggcccaggttctggaaccaattcgtggagatcatcgacaaaacaacaat ggctggtgtcacgaaattggcttatttgaagtccttcctcgacccgaaggtgaaaaagtcgatcgagggattaccgtttt ctaacgaaggctacaacagggccaagtccattttgctggataaacatgggaaggattcagaaataattaaagcttacacg cgacagatctttgacctgccaatcatttcagaccagaacgtcgccaggattcacgaatttaacgacaagctaactttctc cgtgcagtccttgcaaacaatggggaaattagagcaagtcaatggctatgtcgcgatgaccttggacaagttgccggcga ttcgtggagatttgacccgaacagacacttcatgggaaaattggaccttcgacaaattaacagaagctttgcgactgtgg acgcgaaggaatccaatcaccagacagaacgaaaatcgacccgatgacagaagcagaaatcgacccgaggacagaaaatg gcgtgaaaatcgaaaccggcgcaatgacaggaactggcgtgacaaccgaagccgacgcgatgacagaaatcaaagagaca agccaccgtcgtgggcctttaatactcagcaatcgaatggcacacgcacgcaatgttccgtgtactgcgaggcgaccgag cacaagtccttcaactgcaccaatgtcgttgatgtgagtacaagacgatccatccttcttcagaaacgcttatgcttcaa ctgtaccggtcctcacaaagccgaacattgccgtagcaaaatgacctgccagacctgcaatcaaaagcaccacacctcaa tttgtgacagcgccccaagatcacaaggactgttgacggcccacttatcagacaaacgtgaagtggtgtatcccgtggtt ttagtcaatgttgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgtcgaaccagcccca gctgaacctaagggaacccaatttaacattccacatagagctgtagtccgggagaacgcagaaacaaccaagttaagagt actttatgatgcgtcagcaagagaaaacgccaatcagccatccttaaacgactgtcttcacccgggacctcccctgcaga acctgttgtggagtattctgatcagagctcgcttttaccccgtgttgctaactggagacctgcagaaagccttcttgcaa gtgcgcataaaagaggaagaaagggacgccttaagatttcactggaaatttaaaggacactcagaaatagagactttgag attcaccagggccctgtttgggcttacatcatcaccattcctgttggggggagttatccaacagcatttgaaagcatggg aggagagagagccagaattagtcgcacaaatcacaaagagcctctacgttgatgatctgatcaccggagcaccaacagtg aaacaaacgcagcagcaaaaagaaaaggccaccgagatcttcaatgatgctcaattcacgctccacaaatggaaatccaa cgcacctgagctagaacagcaagctaaacccgaagaccatgataaggagagctttgccaaacaacaactaggaaccaaga catctgaatcaaagctactgggtctaccttgggatccaaatgcagacacattaagcgtttgttttcctcgacaacaagaa gccaccaagaggggaatcttgtctcatctagccaaggtctacgacccacttggactggtatcacccatgacactcagtgg caagttcgtatttcgagacctgtgtgagaggaaactaccctgggacacgcccatcccagcagatttggaaaaggactgga agaagtggagtctccatttacctcagttcgtaagcgtgaagcggacaattgcaccatttagagaagcaattaactctatc caactacactcctttggagatgcaagctcaaagggagtctgtgctgctgtctacgcggtggtcaaccaagaatcaggaac aactcaaggccttgtcacttccaagtcacgcctgtcgaaaaagagcctcaccatcccaagattggagctagtggctggcc acatggctgtcaacctggcagtaaacgtcgccctttactggatagcacagtcgccctttactggatacaaggaagtggag aataccgccaatttgttgcaaaccgagtgcaaaagatccagcagcatcaggggattgtctggcgtcatgtaccaacagat cagaaccccgcagacctgggaagtagaggtggaactgtgaccagtacgtcattatggatgaatggacctcagtggttacc caacccagatcagtggcccaaaaatgttgaagttgagccctcctccgagtctcgatcagaagccaaagtgacaaaagaaa tcctagccttagcc |
Protein
Protein ID | aug_v2a.19791.t1 |
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Definition | - |
>aug_v2a.19791.t1 MPKDCTKKPVNQLNQRTVEADQCKTVVEETKIAAKESPEDLNQWITEVDGKILYADESVKSLKETLEELRYEELLKKQEK EVDFEQKLFETKMKFQTELQTAKKQAEEENKFTASGSESGHGSPAKLPKLNISRFDGTYEDWPRFWNQFVEIIDKTTMAG VTKLAYLKSFLDPKVKKSIEGLPFSNEGYNRAKSILLDKHGKDSEIIKAYTRQIFDLPIISDQNVARIHEFNDKLTFSVQ SLQTMGKLEQVNGYVAMTLDKLPAIRGDLTRTDTSWENWTFDKLTEALRLWTRRNPITRQNENRPDDRSRNRPEDRKWRE NRNRRNDRNWRDNRSRRDDRNQRDKPPSWAFNTQQSNGTRTQCSVYCEATEHKSFNCTNVVDVSTRRSILLQKRLCFNCT GPHKAEHCRSKMTCQTCNQKHHTSICDSAPRSQGLLTAHLSDKPPAEPKGTQFNIPHRAVVRENAETTKLRVLYDASARE NANQPSLNDCLHPGPPLQNLLWSILIRARFYPVLLTGDLQKAFLQVRIKEEERDALRFHWKFKGHSEIETLRFTRALFGL TSSPFLLGGVIQQHLKAWEEREPELVAQITKSLYVDDLITGAPTVKQTQQQKEKATEIFNDAQFTLHKWKSNAPELEQQA KPEDHDKESFAKQQLGTKTSESKLLGLPWDPNADTLSVCFPRQQEATKRGILSHLAKVYDPLGLVSPMTLSGKFVFRDLC ERKLPWDTPIPADLEKDWKKWSLHLPQFVSVKRTIAPFREAINSIQLHSFGDASSKGVCAAVYAVVNQESGTTQGLVTSK SRLSKKSLTIPRLELVAGHMAVNLAVNVALYWIAQSPFTGYKEVENTANLLQTECKRSSSIRGLSGVMYQQIRTPQTWEV EVEL* |