Gene
Gene Model ID | aug_v2a.19955 |
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Locus | scaf12090 : 19485 ... 23175 : - |
To GenomeBrowser | scaf12090:19485..23175 |
Genes list of scaffold | scaf12090 |
Manual annotation
Study field | Retrovirus |
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Gene name | Adi-Retrovirus-related 2-8 |
Description | DNA sequence of this gene model showed similarity with that of Adi-Retrovirus-related 2-1. This gene model contains RVT_1 and rve domains. |
mRNA evidence |
Annotation by Blast2GO
Annotation | GO |
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integrase core domain protein | GO:0003824 GO:0043170 GO:0044238 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.19955.t1 | gi|514682663|ref|XP_004988914.1| | hypothetical protein PTSG_12975 [Salpingoeca rosetta] | 0.0 |
aug_v2a.19955.t1 | gi|339258874|ref|XP_003369623.1| | putative integrase core domain protein [Trichinella spiralis] | 0.0 |
aug_v2a.19955.t1 | gi|528495735|ref|XP_005156176.1| | PREDICTED: uncharacterized protein LOC101885994 [Danio rerio] | 0.0 |
aug_v2a.19955.t1 | gi|242022144|ref|XP_002431501.1| | enzymatic polyprotein, putative [Pediculus humanus corporis] | 0.0 |
aug_v2a.19955.t1 | gi|242022148|ref|XP_002431503.1| | enzymatic polyprotein; Endonuclease; Reverse transcriptase, putative [Pediculus humanus corporis] | 0.0 |
Transcript
Transcript ID | aug_v2a.19955.t1 |
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Definition | - |
>aug_v2a.19955.t1 acgggctggcacccctgtctcactgaggcatagacccgtgatgtgggcgcgacgtcaaactttaacacacaagcaacgaa tgccaaccagtcaaggtggtactgataaatatgccttctgtgcaccgtatgatggtcatttcgttggcaatgagcaaagt taccgtcgtccagtgatccgttcaagttcccagtccgaaaatacagctcatgtgagtcgcgaggaatttgcacgtgatgc ttccgatttaaataatctgtgtgatcatgatgtcgaccaagtagagaatgctttgactaagatggtacagtcattaactg gggtcatagcaaaattcgagagtttagttaatggtatgccatgcagtaatgacactaaaagtaagcaaaatggcacagat ttgcatgtttttgtttcgtcttctcaaaatgaagatcatgtcaaaaagctctctagtgaagcctctcctcaaaatgttga tgagcacgttgatccaattgaccccgttgtttgcaaggacgaagtgcatttcattaatcaaaacagtcctgttcaaaaca gaatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgattcaatcaaggaaaagaaactgatttaagtgtttttttg cataacgtagttgttgaagttgatcctcaagtgtttgaagtcgccaatgtcgaagaaagcgatgtggcttttgaggacgc acaagtggacgtgtgtgatgttttggaccacgatgatgtcaagattactgaatttgtagttaatcattccgtagttactt gttcgcatttgaccaagaattttacccgtaaagtttcgcctattgctgccaataaagaagccaggggtgaaaccaatcat ggcgatattgtgtcaagtgagcagacacagttcttaaacggatttaattctccattccatacaaaggattccacgatttc cgttaatatcgcacatttgaatttccgagcgttgatagacacaggtgatgcactgcctattaagcaacggccgtatcgga ccagtcctaagtgtaaacaagagattgatcgccaagtggaagatatgctccaaaagggaataattagagaatccgtttct ccatggagttcacccgtagttctcgtcaagaaaaaggatggtagttttcgtttttgtgtcgatttgaggaaagttaatgc atttacgaggaaagacagttttcctatgccttatgtgtctgatacccttgatgctttgagtggaactaagtattatttta cgcttgacttaaaatcgggttattggcaaactgaaatgcacccagagtctcgagagaaaacagctttcgtaacacacgac gttctttacgaatttaatgttatgccgtttggtcttaccaattctggcgctagctttcagcgtcttatgggccatatact tcgaggattagagtacagatttgctctgatttatatcgatgacatcatcatcttctctaaatcaattgacgaacatttgg cccatttagagaaagtttttagaagattgcgtgaggctaacgtgaaattgaacccgaagaaatgcagctttgtaaaacaa cgaattgagtatttgggtcatgttgtgactccagaaggtatcttccctgaccctagtaaagtagaagtcgttgagaattc tccaacatcagcgagtctaaaggaattaaagagttttcttggcttagctaattgttaccgacgattcatcaaaggtttct cagaaattgctagtcctcttaatgcattaacaaagaagggcgttaagtttttttggtctgagtcatgtgctgttgcattt gatcgattgaagcgtgctttgatttcagctcctgttttggcgtttaccaatttcgacgagcaatttttaccttatgtcga tgctagttcaagcggcgtagggctcgctctcgaacaggttcagaatggtaaagaggtggtaatcgcttataatggaagta gccttaaccaggcagagcgtaattacacaacaacagagagagaagcagtcgttctagtagagggtatcaagaaattccag ccgtattcacatgatcgcaaattcgtagtgtatacagatcatagttctcttcgttggcttatgaatgttaaagatgcgac tggtcgattagccagatgggctttgttgcttcaacaatacaatttcgaaatcattcaccgtccaggttgtcaaaatggta acgctgatgctttatcaaggcgtccatatccaaccaccaacttgaacgccttacagcagagtgaacctgagactgataag atccgtgaaaaacagcgcaaagatccagagttaagtgaaatgatagattatatccagaatgacattttgcccagcaacga tgcgaaagctagaagaattttgttgagaggcgacagtttttacatcagtcaggacggtttgttgtgtcatctcgatcgta gccagaaacgtgcacgtgatagtttttctcaacttgttgttcctcagtcgatgaagtacgaaattttgtataatatgata atcatgtcgctggtgcccattttggagtgcacaaaacttttcaaaagttgaaacaacgctattggtggcccagcatgttt aaggatgtagagcactggtgtaagtcgtgtgttgattgtgcaatgaaaaaatcaccaaggaacaccaaaagagctccact tttgtcattgcttgtcgaaggtgcttttgacagagtctctgttgatgttttaggtccgttcaagccgtcgaacagacaga atcgatacatcgtagtttttagtgattactcaacactttggtgtgaagcatttgctgttcctagtgtagaagccactgtg attgcacacttgttagtcgatgaaattattgcaaggcatggtgctccaagagttttgctttcagatagaggaactaactt tctctctaagcttgtagcggaggtgtgcaaaattttccaaattcagaaagtgaacacatctagttatcacccgcaaacag acagacttgttgaaagattcaattcacccctttgtcaatcactttttatgtacgtagccaagaatcagaaagattgggac gatttcatccagctaattttatttgcgcatcgaacttcgatttcagaagctataggcgattctccattctattgtctgta tggtcgtgagccacgccctcctgttgatgtaaaatttctgccaccagctgccgacgacctctcaacttcagttttagatc atcgaaagcgtgttgtcgaaaaagtagaattagctcagaatcttgctcgtgaaaatatacagctttcacagcagaaaatg aaagaatactacgatcgtaatgcaagtcaaccactattcgaaattggactacgtgtttgggtttacagaccaaaaatgaa gaaggacccatcaaagaaactcttgtataactggtttggtccgtaaagaatcgtcgagcaatcttctcctgttcaatatt ggttgcgtgctaaaaacaacaagaagtttactttcgctgttcatgctaatagaatgaaaccttttgtcgatcctgcttta agaccaattgaaccaccgattgatgatgacccgagtgaaccctacctagatgagtcagacattcctgctgactctttcga agttagcgagt |
Protein
Protein ID | aug_v2a.19955.t1 |
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Definition | - |
>aug_v2a.19955.t1 MWARRQTLTHKQRMPTSQGGTDKYAFCAPYDGHFVGNEQSYRRPVIRSSSQSENTAHVSREEFARDASDLNNLCDHDVDQ VENALTKMVQSLTGVIAKFESLVNGMPCSNDTKIVEVDPQVFEVANVEESDVAFEDAQVDVCDVLDHDDVKITEFVVNHS VVTCSHLTKNFTRKVSPIAANKEARGETNHGDIVSSEQTQFLNGFNSPFHTKDSTISVNIAHLNFRALIDTGDALPIKQR PYRTSPKCKQEIDRQVEDMLQKGIIRESVSPWSSPVVLVKKKDGSFRFCVDLRKVNAFTRKDSFPMPYVSDTLDALSGTK YYFTLDLKSGYWQTEMHPESREKTAFVTHDVLYEFNVMPFGLTNSGASFQRLMGHILRGLEYRFALIYIDDIIIFSKSID EHLAHLEKVFRRLREANVKLNPKKCSFVKQRIEYLGHVVTPEGIFPDPSKVEVVENSPTSASLKELKSFLGLANCYRRFI KGFSEIASPLNALTKKGVKFFWSESCAVAFDRLKRALISAPVLAFTNFDEQFLPYVDASSSGVGLALEQVQNGKEVVIAY NGSSLNQAERNYTTTEREAVVLVEGIKKFQPYSHDRKFVVYTDHSSLRWLMNVKDATGRLARWALLLQQYNFEIIHRPGC QNGNADALSRRPYPTTNLNALQQSEPETDKIREKQRKDPELSEMIDYIQNDILPSNDAKARRILLRGDSFYISQDGLLCH LDRSQKRARDSFSQLVVPQSMNMFKDVEHWCKSCVDCAMKKSPRNTKRAPLLSLLVEGAFDRVSVDVLGPFKPSNRQNRY IVVFSDYSTLWCEAFAVPSVEATVIAHLLVDEIIARHGAPRVLLSDRGTNFLSKLVAEVCKIFQIQKVNTSSYHPQTDRL VERFNSPLCQSLFMYVAKNQKDWDDFIQLILFAHRTSISEAIGDSPFYCLYGREPRPPVDVKFLPPAADDLSTSVLDHRK RVVEKVELAQNLARENIQLSQQKMKEYYDRNASQPLFEIGLRVWVYRPKMKKDPSKKLLYNWFGP* |