Gene
Gene Model ID | aug_v2a.20778 |
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Locus | scaf13121 : 3777 ... 6795 : - |
To GenomeBrowser | scaf13121:3777..6795 |
Genes list of scaffold | scaf13121 |
Manual annotation
Study field | Retrovirus |
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Gene name | Adi-Retrovirus-related 1-4 |
Description | DNA sequence of this gene model showed similarity with that of Adi-Retrovirus-related 1-1. This gene model has RVT_1 and rve domains. |
mRNA evidence |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.20778.t1 | gi|584009611|ref|XP_006799748.1| | PREDICTED: uncharacterized protein LOC102798755, partial [Neolamprologus brichardi] | 0.0 |
aug_v2a.20778.t1 | gi|688580360|ref|XP_009305044.1| | PREDICTED: uncharacterized protein LOC100537292 [Danio rerio] | 0.0 |
aug_v2a.20778.t1 | gi|548397618|ref|XP_005737822.1| | PREDICTED: uncharacterized protein LOC102206490 [Pundamilia nyererei] | 0.0 |
aug_v2a.20778.t1 | gi|542243441|ref|XP_005458760.1| | PREDICTED: uncharacterized protein LOC102076047 [Oreochromis niloticus] | 0.0 |
Transcript
Transcript ID | aug_v2a.20778.t1 |
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Definition | - |
>aug_v2a.20778.t1 cggaaagctcgctgtctacccaagctatcgccaggcctaacgcggccatactagtgcccaggacggcactcgattttgta gcggagaatagcatggtgtttggtccccttgataaagtttacaggatcaccgtcgctgaaaccgtaacattatcaccaaa tatggttgctgatataccttgtgtgattgagggggtgagtggtcacaaggaatgtgtgggtgtggttgaaccggtaggta agttctcagaaaggtattctgttggagccttgcggactgcagtaactgtaaaagatgggcgaataccagttcgtgtgttg cctcaacaagcctctgaaaatttatcgctgcagcagtgttggagacctccacccactagtggatggaggtgatctgcctg ataaaggtgcgagtgagggttacaaagttgtaaagggtgctaaagaacatgtcaaggtagagttcggggctaggcagtgt agtgcagtttttgtggaaaactctgaggctgataatgtacctttcgcagaaatgtttcccataagcagtgattcagttcc ggaagaggaaaaacgtaagcactatgaggttctatccacctatgctgactgcatttcaagggcgccatgggatttaggct cagcaaaaggtgtaaaacataatcattgacaatggatcagcacagcaaatacaggtaccttctagagtcccttttcataa aaggcaagaaatgcgccgccaaatggaggaaatgcttgaagcacagatcctagagccttccgaatccccgtggtcctctc ctgtggttttgattgccaagcctgacagcactcaacgcttctgtgtggactatcgggctctgaacaaggtaaccaagcga gacttgtatccacttccacggtgtgatgacatattggagagcttagctggtgcacagtggttttctcaccttgatctgct ctgtggatattggcaaatcgatgttgtggaagaagatcgggagaaaacagcctttgcaaccccggacggtctttaccaat tccgcaagttattaagttttggccttactaatgcaccagcatgtttcatgagggccatgcatcttgtcttaaaaggcttg tgctggtcagactgtctagtgtatctagatgacatcattgtctttggccgaaccctacaggagcacagagagagactgcc actggttttgtcgcgtttgtctgaagcaggcttgaagatgaaccctaagaaatgcaaactcttgtcagaacgagtgattg tgctcggtcatgtggtgacccgggatggcatttctactgatccagagaaagtgagagtcattaaattgtggccagtgcca gaggacgacagccaactgaaggcattcttgggaacagccagttactaccgacaatttgtgccaaactatgctaccattgc tacccctttataccgcgcttctcaaaagggtgaacgttttagatggacggtgcagtgtgaggaagcctttgcgagcatta agcggaagctgacgaatgcccccatctttgattttcctcagttggacgagccatttattttagacactgatgccagagac aagggcttaggggcagtgttatctcaggttcagggtgggaacgagcgcgtcatagcttatttatgcggcacgcgcacttt caatggccgaaggaaactacagcaaaacccggaaggaactcctagcccttgtctggggagcagaacactttgggacatat ctttgcggcagacgatttcttgttaggactgaccatagtgctctgcagtggctacagaatttcaagaaccctaggggtca ggttgcccgcttgctagagagactgagtgatttcgactttgaggttgaacatcgctctggacaatcgcatggaaatgcag atggaccctcgcgtttgacatgggaaagtatcaattccgctgaacaagatgaggatgccgtgttgatcaactccgtcaac gtagagccgctgtcaagggaaagtgtaaaggtagcgctgaaacaggatcctattctgtcgcaggtggtggattggcttaa aaccggcgtgaaacctgcgagatgtgatgtggaaggaggtggccgcaaactgctgtcatactggtctcagtggggaagac tgcttctaagggatggcctggtattgagacgctgggaaaacgaaaagacaggccaagagatcaaccaacagatttgttcg ccagaaagctttgtgcctcaagtgttgcatgtccttcataatagcccttcagccggtcacattggtgtgccaaaaacttt ggagaaggtgcgaaggagattttattggcatggcatgcgtgagaatgttgaaaatcacatcagaaggtgcggtccttgtg ctcaagttaatgacccaagcaagttgcctagagcacctcttatcaacatcaagtcgggtcaccccttgcaaagagttgct attgacattgttggacctacgccaaggtcaagccttggtcacgagtggctgctggtggtctctgaccacttcactagatt tgggcaagcttttccagtaaggaacacatcagctgtaacacttgctaagaaagtgatggacgagtacatatgtcgatttg gctgttttgagagcttaaattctgatcagggagccaatgttgatggagctgtcttcaagggactgtgtgatttaattgat gcagcaaaaactcgaacgactccatatcatcctcagggggatggacaagtggagaggctaaacaatcactggtgaagatt ttgtacaaattgatttctgaccatcgccgggactgggcagactttgtgccaaaagcggtttttgcgtacaataccagtgt gcacgagtcaactgggtttaccccttaccgtctaatgtttggccaggaagctattttgcctcttgacgcagtcctgaagc ttgagacgtcaccgccccagagaggggtacagagttatcctgattatgttgttcagcag |
Protein
Protein ID | aug_v2a.20778.t1 |
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Definition | - |
>aug_v2a.20778.t1 MVFGPLDKVYRITVAETVTLSPNMVADIPCVIEGVSGHKECVGVVEPVGKFSERYSVGALRTAVTVKDGRIPVRVLPQQA SENLSLQQCWRPPPTSGWRQEMRRQMEEMLEAQILEPSESPWSSPVVLIAKPDSTQRFCVDYRALNKVTKRDLYPLPRCD DILESLAGAQWFSHLDLLCGYWQIDVVEEDREKTAFATPDGLYQFRKLLSFGLTNAPACFMRAMHLVLKGLCWSDCLVYL DDIIVFGRTLQEHRERLPLVLSRLSEAGLKMNPKKCKLLSERVIVLGHVVTRDGISTDPEKVRVIKLWPVPEDDSQLKAF LGTASYYRQFVPNYATIATPLYRASQKGERFRWTVQCEEAFASIKRKLTNAPIFDFPQLDEPFILDTDARDKGLGAVLSQ VQERLSDFDFEVEHRSGQSHGNADGPSRLTWESINSAEQDEDAVLINSVNVEPLSRESVKVALKQDPILSQVVDWLKTGV KPARCDVEGGGRKLLSYWSQWGRLLLRDGLVLRRWENEKTGQEINQQICSPESFVPQVLHVLHNSPSAGHIGVPKTLEKV RRRFYWHGMRENVENHIRRCGPCAQVNDPSKLPRAPLINIKSGHPLQRVAIDIVGPTPRSSLGHEWLLVVSDHFTRFGQA FPVRNTSAVTLAKKVMDEYICRFGCFESLNSDQGANVDGAVFKGLCDLIDAAKTRTTPYHPQGDGQVERLNNHW* |