Gene
Gene Model ID | aug_v2a.22957 |
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Locus | scaf16209 : 19647 ... 25058 : + |
To GenomeBrowser | scaf16209:19647..25058 |
Genes list of scaffold | scaf16209 |
Manual annotation
Study field | Retrovirus |
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Gene name | Adi-Retrovirus-related 20-19 |
Description | DNA sequence of this gene model showed similarity with that of Adi-Retrovirus-related 20-1. This gene model contains Rapsyn_N, DUF2977, TPR_1 and TPR_2 domains. |
mRNA evidence |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.22957.t1 | gi|620961770|ref|XP_007665735.1| | PREDICTED: tetratricopeptide repeat protein 28 [Ornithorhynchus anatinus] | 0.0 |
aug_v2a.22957.t1 | gi|641703895|ref|XP_008140707.1| | PREDICTED: tetratricopeptide repeat protein 28 [Eptesicus fuscus] | 0.0 |
aug_v2a.22957.t1 | gi|663241242|ref|XP_008492177.1| | PREDICTED: LOW QUALITY PROTEIN: tetratricopeptide repeat protein 28 [Calypte anna] | 0.0 |
Transcript
Transcript ID | aug_v2a.22957.t1 |
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Definition | - |
>aug_v2a.22957.t1 cagtcttgtcaagaagaatggatgacaaagcagaaaaagaaacaacctctaaaaatcgcggtacagacttccactcacgg ggggaattaggacaagacattgagtgtcatgaaaaagatttggaaattgcaatagaaatcggtgatcgggccagagaagg aaacgcttatgggaatctcggtaacacttaccgcttactgggtaacttccgaagagccattgagtatcatgaaaagaatt tgagacttgcactagaaacaggtgatcgggccggagaaggagaagcctatggaaatctcggttgcgcttatgactcaatg ggtgacttccctaaagccattgagtatcatgaaaaatatctcaaacttgcaatagaaatcggtgacctagacggaaaagg acgggcctgtggaggcctcggtaatgcctacgactcactaggtgatttccgaaaagccattgagtatcacaaaaatgctt taaaaattgcaaaagaaatcgatgatcaagaaggcgaaggagtagcctatggaaatctcggtaatgctttcttttcattg gctgacttccgaaaagccattgcgtgtcatgaaaaacatttaaaaattgcaatggaaagcggtcttcaaggcggagaagg aacggcctgtggaaatattggcaatgcttatcacgcactggctgactttcagaaagccattgagtaccaccaaagagccc ttaaaactgcaatagaaatcgccgatcgagaaggagaaggatttgcgtatggaaatctcggcaatgcttgcaactctttg ggtgacttccttaaagctcttgattatcataaaaaacatttgaaaattgcaagagaaatcggtcatcgagccggacaagg aacggcctatggaaatctcggctatacgtaccgttcactgggtgatttccgaaaagccattaaatatcatgaaaaagatt taaaaatttcagtagaaatcggtgatcgagccggaaaaggaacggcgtatggaaatctaggttatgcttatcgttcactg ggtgacttccgaaaagctattgaatatcatgaagaacatttaaaaattgcaaaagaaatcggtgatcgggccggagaagg aggagcttatggaaatctcggtaatgcttaccagtcactgggtgactatcgaaaagccattgagtatcatgaaaaacatt tgaaaattgcgaaaaaaatcggagatcgggccaaagaaggaggaggctatggaaatctcggtattgnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnncatttgaaaattgcgatagaaatcggtgatcaggccagagaagaaggagtctatggaaatctcggt aatgcttactagtcactggttgagtatcgaaaagacattgagtttcataaaaaaaagatttgaaaattgcagaggaaatc ggtgatgggctggagaaggaggaacgtatggaaatctcggtactgattagcatgcagtcactggtttactgtggaaaaaa cactgagtatcatgaaaatgatttgacaattgcaatagaggtcagtgatcgggcacggagaagcaagaacgtatcacaac attggaaatatatacttttctattgaacaattcgaaaacgcggtgaataactttgtgagtcaggtagcagctgtcacaag atacaatgtgattggctcgatacccaaacccaaaacaaaagggtaaaagaacaaccgtcattgtattgtctattggtatt acagcatcttctattgttcttaatgataattcacagtatctattgtttagtcttttgttttgggtttggttatcgagcca atcacattgtatcttaggagagctgcaacactactggcaacgacctccataaggcagtgtaagtctcttcatgttgctga cggaaattaatcttccaatgatgttccgacttcaggagagatctcaaaggatcaaaggcatccacagcggaaacaaagtt cagctttcttatgatcagtgtacactgagagttgtgtcattccgaagtccacagtccttgtctatacgatttctatttcg tactcaatgaatgtgaaaagggaaatttcccaaacaatgaactctcgtttcccttacgtaaatcagttcgtgaaaatgat ttcgagtgcaatttggaataaataagcacgagtaaattttttcaaagactaacaaaactgcacgagcccnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacgcacgcgtat cacgcaatcagggaaaaattgtgtcatgaattgcgccatccagggtgtgcgcttgatttgaagacaaatgatttgatcgg ccatctgtgagtttctatttcgcgactttgctgtcaatcaatttaatttcaagtttttgcactcaatttcaactttctgc actaatttcgtctttctgcggtcaaaaaatttcaagtttttgcactgtttgggattaattgacatgctctcagccaatca gcatggagaaattttttcatgtatattattaatcggaaaacaatgcgcttggctttcacaatttttcataaaattatgaa acaaaaggacgggaatattcatccagggtgtttgtgctagcgtttaatctttttttgtctaaaattgaaagtcgctagat tgtttctcctttttccttccttgagtacattctactagatataagatcaattaacagtttagagcttttaagaaaaagct caaaacatttgtttttacttttatgatatatatgcatatattgctttgtttattgcactttaatttcattggtgataact attgtaaacagcgcctttgggcgaaacggatttaggtgttatataaattctnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnatcgtaagaacttcggtggaggaagaaactgtgaaaatctctatgaagcaagtgcctattaactctccaataa agaaatattgtcacagtcatgtgtttcattattcaaggttttatgatcagtgcgaactgagctgtgccagtccatagttc acagcttttgaacgcaatctgcatttcatgctgactggttttcaaaagcaaattttccgaacaatgaccttttgtgttca tcaagcaaatccagttgtggatagatacgagaagaaaactacagattttactcagtttcctttgtgcgacggaaggtgca aatcaaaccatcaatgaatgccgtttgtttttactgacatcgaatctttgactgataggtgagtacgtactgagtaatac tcaataaaaaccatttacttgcaatgttttgcaaaccgccggattaaatcattaattcgttttgaatatttggtaagttt ctgttgtaatcaaagttagtggctacttgttgcgatctgcttttcgcggaaaggaaggcagtaagatggtcatttcaaag ttttcattggaattaaagtaaaatgttacacaattttcaagtcaatttttccaacatgattggtaaagctattttaagta tccgaatcaagtttactgaaacgtttccagtgcggacgatttgaaaatagcgaacaaaaatcaatcaacgcactcttaat gtttagtttagtactgtagtaccgttatcatcaaaccagctaaatgtttgcgaatcgtgttttgcgcctcttcctgtcat gttaagttttacaaatgtacctgccgacatttatcgactttattgcatcattgaaaagtatttaaaaagcggtctttttt agcttcgacctgcgtagatgctcgaacacagcaattctctcaaaatctaaacttttttgcggcctctcttatactaggaa atttttccggcaacttgtggtacgtcgtgagacctactacacttcgttaattgcaacttgtctcgcggcgatggtcaaaa acagtgtggaggactagctttataacaacataagttgcaaaaagttagaaagattaaatttacttggtcgatggtgctga acgttgcgacacaaaatgaaggaatgatgttacactgcgcgacgattgaaaaatttttctcggcgttgcgttgcccaaag tagaacttacagatttgttcttctcgcaacgactgcgataacaaaagtgttgcgaggaatgtcagtggccgggtgtatta cgttgggcaatttttcgcgcaacttctgtcgcattaaaattgcgagacaagt |
Protein
Protein ID | aug_v2a.22957.t1 |
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Definition | - |
>aug_v2a.22957.t1 MDDKAEKETTSKNRGTDFHSRGELGQDIECHEKDLEIAIEIGDRAREGNAYGNLGNTYRLLGNFRRAIEYHEKNLRLALE TGDRAGEGEAYGNLGCAYDSMGDFPKAIEYHEKYLKLAIEIGDLDGKGRACGGLGNAYDSLGDFRKAIEYHKNALKIAKE IDDQEGEGVAYGNLGNAFFSLADFRKAIACHEKHLKIAMESGLQGGEGTACGNIGNAYHALADFQKAIEYHQRALKTAIE IADREGEGFAYGNLGNACNSLGDFLKALDYHKKHLKIAREIGHRAGQGTAYGNLGYTYRSLGDFRKAIKYHEKDLKISVE IGDRAGKGTAYGNLGYAYRSLGDFRKAIEYHEEHLKIAKEIGDRAGEGGAYGNLGNAYQSLEEIGDGLEKEERMEISVLI SMQSLVYCGKNTEYHENDLTIAIEQIQLWIDTRRKLQILLSFLCATEGANQTINECRLFLLTSNL* |