Gene
Gene Model ID | aug_v2a.23586 |
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Locus | scaf16999 : 2 ... 9351 : + |
To GenomeBrowser | scaf16999:2..9351 |
Genes list of scaffold | scaf16999 |
Manual annotation
Study field | Retrovirus |
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Gene name | Adi-Retrovirus-related 86 |
Description | This gene model contains TPR_2, TPR_1, Retrotrans_gag and rve domains. |
mRNA evidence |
Transcript
Transcript ID | aug_v2a.23586.t1 |
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Definition | - |
>aug_v2a.23586.t1 atggaaatctcggtattgcttacgactcactgggtgactatcgaaaagccattgagtattatgaaaaagacctgacaatt gcaagagaaactggtgaccaggctggagaaggaagagcttatcataacattggaatcggattcttttttctggatgaaat tgaaaacgcgatggagaattttgcttccgctgtgaataccttcaattctttgagagctctgttgaagtctcaagataatt ggaaaataaactttcgagagttgtacgaagccacgtacactgctttgtggatgttgttgctaacaatgaaaaagatcgat gaagctttgtttgcggctgaacaaggacgagcgcagactttgtctgacaatctgttgattcaatataaacttgatacatc cttattatcagcgacagagtacagcaaagagacagtgtctcacgtcttgacaaagctttcctcgccaactctttttctag caattaaaggctttacggcccacatctggtttctcagaaagggaaagaaaattatatttcggaaagggaggctggagggt gacaaaagagagaaagatcctttattcgccttgcttcaatcagctttagaaaaaatcgtagctaaagatacaaaaagatg tgaagatcgtacattcaatgatgaacttgacaatgaatgcttgcttagcatagacgtgcggggtgaaggagttggaaaac cgccattgccgtctttagataatccctttaagccattttatgatgcagttattgatcccattcttgacatgcttgaactt caagacgacgagttggtcattgtttctgatggtgcgctgtgctttatcccatgggccgcagttattgaatcgattaggat tcgcattgttccatcactgacaagttatcagttgatcttaagtgcaccccaaggacatcacaggaagaagggggcgcttt tggtcggaaatccctgcttaaaagagttgaagaaacccttaaacgacttaccatgtgctcaagaagaagtagaaatgatt gcatcaattctcaagaccacacctctgacagggatacatgcaacaaaagctgaagtgatgaaacggatgtcgtcagttgg cttaattcatattgctgcccacggaaacgagcgcactggagaaattgctttgtctccaaaccctggatggtcttcaaagt tccctcaaagaagggattacattttaaaaatgtccgatgtgcaggctgccaatcttcgagcgcgtcttgtggtgctaagt tgctgtcacagtggacgaggcagagtcttgaagggtgagggtgtggtcggtatcgcacgtgcttttttggcagctggtgc tcgttctgtgttggtggccctatgggcaatagatgacgaggctaccatggtgtttatgaaaagtttctaccaacacctga aggaaggaacaaccgccaatgctgccgttcagcaatcgatgaaattccttcgtgaatctgagcagttttctgatatgaag tactgggctccattccaacttatcggagaagacgtcaagattgaattcgaggcggatgatgacgacgaaaagtgagatta ataagttttttccattcatttttcagcataatgaccggcgtacttggtttctctggatgttttacttttcggtaacgcca cgtaacagaacaactacgataatgtgcagcggttttgttgggcaaagatagaccttctgactacagcaaggaggcagata tgtttaagactgagtcgcttgaggtaacatttgtcataagggcaaactttatgatcagaactcagataaagaaaatgttc ctttttttaaatctgatccacttgcgcccctgtagagtagatttgcttgtaacctgtcttcccttacaaagcacgatgat tggtgatacacccggtgacgttgtgtctttttttcgaataattttattgaattggattcaagttatttcttataactgaa ttcatttgcactagcttattgctgttgtttttcgcaactttgtagtatcatttacgactgaggtgaaacttggtgtttcc cacaatgggcagaagtttacttgtcgtaagaccataagaacttgtgctcgttctgtgttggtggctatatgggatcatat aaatgagaaagctaccatgcatgttgttcaccaaaagtttctaccaacatttgaagcgtcgttaatgatcccacacgttg tcgtctttggtggtgttgaaatacatcatggttaactgatatcatgaagaagttgtttcatgaatatttcaaaatatttt attgatgagtattaaacacaatagtagtggtactttacactttttagagccaaacgaagctaaatgacggatttaatcct gatattatcattaaggcgcattaatagatcttgacaattagagataggcctacaaggagggcttttcggccattattgac caaattgaatacgcctactgttaacattgagtttaagacctttttttagttctctgataacgacgtcaataaatgctaaa acaatatctcccacaagattaccgatcaccacattgtaccctagagttaacaactagcgtaagcttaagtaaaagatcaa aaaaactatgatctccagaactagagtaagggcatgtgcagtcaaatagacctcggtcatagatcacttcagcttttatt caccgcttatgtacggtacagtgaatgaaatagtcctttctatagctatctgacaccgactttcagggaatgcgcaaaag attgtctactcgatgaacgatcactgacactctgcttttctttataacatccttaatgaatgtgtagcttattttggacc caatttgtaatcacttagtaagtaaaagttataacttttagtatgcatcttacctgtagaacgttttgattatacaaatt cttactgtcagcccttggtgtccttttcaaggtttatatcaagaaataattaaccgaagttaacttttggtatgttatgt gctaaaaatttacttttagtatgtaagtgatgattggtatgttttgtatataattgaacattgtgattatacaaattcac atatcaccattcttaactgtctagccttggttttctttttgaggttcatgtaaaataataagcgtctttattggatgatt ttgtttcatgatgttacatctgcctgatcagtgaggacgtaattaatcgagatcattcccctttcctcatgattcccact cagatgatttctccgtcttagaaaacgtggctttatattctaattcattgtcgcgctcaaacgtacatacgacatatatt tactattcaatacccagggctattgttctctctctgcactaaatcactgattgcaggtgccccttctcctttgttcgtgt acgcacaaaacgaaataattaccacttgttgaatagctagactgggaattggtgactgagaagccttgcggtagcgtttg aacatttgattgcgttttgtgtatgtgtgttgtggtttggaatttttttcaacaggtaggtgtctgaactactggaaaaa caatgtgctgtgtgagaaatgcagtccgtttctcactaattatagtttttaatttagacgcctttgctttaacagttggt ttgtgtttgttttcgagaatgggatgttttccaactggcggcttgctgaacagttttaaaacaatgtgcagtgttagaaa tgcgttatgtttccctctaatcatagtttttaatttcgatgtctttgttttaatagttgatttgtgttctgtgttgttcg ttttcgagcgtgtaatgttttctaaatagcggccttctgatcaattttaaaaaatgtgggaccgtgcttgtcaaaagttg ctgaagactgcgtcgttgtagattatctcaagcctgcggtgcttcaaaccctgaacccaaaccagtatggtgcagttcca aattcatctaccacccaagcactaattaacaaggttcatcattggtccaagggaacagatggaaatggcgcaagcgttag agtgactctttttgattacctaaaagcttttgatctcatcgaccataatatcattgtaagtacgttatgtaagcttagta taccaacaagaataattaattggataaccgactttctctccgctcgtttccagagattaatcaaactctctgaaggttgt tactctgagtggggctcagttccatccggtgtccctcaggggacgaaattaggaccgtggttgtttcttgttctcaacaa tgatctagtaattgacaacggtatagcccatatatggaactatattgacgataggactgtatctgatgtagtaatcaagg gcagagaaagcaacgcccaaaaaattgcagataatgtagcaaagtggtcctcagataatagagtccaactgaacagtgat aagtatcaaataatctcacgtggaatgagcacattaatgagatcattaagaaagcgtctaaacgcttatattttctaagt cagctgaaaagagcaagagttgctaagcaagatttagttcttttctatatctcttgcatccgttccattctgacccacgc atctccagtatttttctatgtgtggtgtatttgttctctcgcctataagagcctggacacgtctgtatctcgtttgggtg tgattacgtgacagctacgcgttttcgttttttgagtccgccatgtgctccttgtagagttattaaagttagtacttaac attctggaaagttaatctcagcggtggaaaacacgcattaattcaaaacacgcacggaaagtccggaaccgacagaataa acgaaggaaattatgaccggtagaccaccttttgaccagttcgacgctgactccgaagatattgaaagctatctggaaag acttcaagagtactttaccgcctatgatattacggatgacgaagacaacgctgctaaacggcgagcgattttattgacat caataggaagcaactgttttcgagtgctgaaagatttggcatttcccgacgctcctaacacgaaaacatttgctcagttg gcgactttgcttggtgagcattttaagccgacgcgtttgaagatcgcagagagataccgtttccattctgctgttcagca acaagggcagtccattgccgatttcgtccgcgagttaaagaaattagctggaacatgtgagtttacgaatgaacagttaa atgataatttacgcgatcgttttatttgtggcttacgctcacaacatgtgaagcagaaactcttgtcaaggaactttacc ctccaagaagctgtgagcgaagcaatcgcacaagaagcggcacgtaaagatgtaaaagatattgcagattcctatggggg agaaaccagtgctagcggtgacagtcgtggtgtgaatgaagtgacaaccgaaagtcacgcggtcgtttttcaaagcaagg aaaaggtcacgctagagacggaaaatcaggtcagccggcgggagacaagaagcggtgcttccgctgtggcctcacgaatc acacgcatgataactgcagatacaaaggcgcagagtgtttcaagtgtcacaaaacaggccatttgcagtcggaatgtcct agcgtgaagcgctcccctaagccgaagaaagatggacaacatgtctgtcttgcagaagattccgaggaactaaggacaag cgactcagaagacggttttcatgcgtctattttcactctagaagacccagcattcaaagatatctgcccctgcagttaag gttcctgtgcggattgaaggcgttgattttcaaatggaagtggatacaggggcagcagcatctttcatgaactacacgga ttacgtgcgatatttcaaatacctagccctgaggccagtcaataaggcatttcatgcttacaccggtacgccgctggata tcgcaggacagatcttggttgacgtggagtacaacgaccaacaattgaccctaacattgctcattgttcgagctaataag tatgcccctcccctgcttggaagggcatggatgacgaaggtccgcctggactggaagaacttgttctcaccgtctaatgg gcaattcgtagtcgagccggacaacgacgaacgcattgtacgcctaaaggaacgctatgctgagattttcaaacccgagc tgggtacctacaaaggtgtgactgccaaattgcatcttaaagaaaacgtgaagcctgtattccagaatgcacgctcagtg ccctacgcattgcgccccgcggtggagaaggagctgaaaaagatggcatcatcgagccagtggaacttagtgattgggcc acacccatctgtgtacctaagactgatggctcggtacgcgtgtgtggcgactacaaggggactgttaaccccgccatcct gcagtttcctattccgacgctagaggagatgaggggtaagttgctacatggacaaagttcaccaaaactgacctgaggag cgcctaccagcagatggtcttggacaaggcgtcgcagcagctatgcacaatcaacgctcacaagggcttgtttcgatata cccgattgcctttcggaatttcgtcaagtcctgctatctggcaacggttcatcgaacaagttctagcagggctgaacgga acgtgcgtaataatggctgatctgttagtgggtggtgttaacgatgatgaacacttgcgtaatctggaagcagtatttca acagttccagaagtatggcctgagagttaagctcccaaagtgtgtattcatggcaccctcggtgatatacctcggtcttc gcttctcggcgagaggagttcagccaactgataagaaggtgaaggctatccgggacgcgcccactccatgtaacgtgaca gaattacgttcttttctaggaatgcttgcagcacttcacaacttcattcccaagttgtcgacccttgctcatccactcta cgaactgttgggcaacaagccatggaagtggacgtcactttgtgatcaagcctttggtgatatcaaatatgcattaacat cagaaaccaccctgacgcattacgacccagccctttctgtggagttgtccgtggatgcataaccttacggactaggcgca gtcattatgcacgtgtatccaaatgggaaacgccgtcccatcgcctatgcatcgcgaacacttaacgagcatgaaaagcg ttatggccagattgataaggaagccctggcaatcatctttggtttgaaacggttccacgtgtacctgtatggtcgacatt tcacgattctaacgggtcacaaaccactggaacgtatctttgggccaaagacggcgattccgccactggctgctatgggt ctacaacgatgggcaattattcttgcagccttcaattacagtattaaatttgtgccgtccaagcaaaatgctgtggcaga cgcattatcacgcctacctctaccgtcgacggctggcggtgagagcgctgtcttcaaagttgaagagcgtctggtagact gtttgcccatcacccacaaagagataagccacgcaacacaagttgatcctgtgctgtctcgagtgctggagtttgtaagg agtgattggcctcaacacattgaagatttactcctcaagtcttttttccaccgtcgttacgagttatcaattaaacaaga ttgtctggtatggggaatacgcgtggtcatccctactcgttaccagaaggacatttcggacgaattgcatgtaggtcatc tgggcatcgtccgcatgaaggagttagctcgcagctacctttggtggccaaatatcgattcggaaatagaacagactgtg aggaattgtagtcgctgtcaacaagttagaaaaccaccggcggcagctccattagcatcctnnnnnnnnnnnnnnnnnnn nnnnncaactttatttatagagggtaacacataacagttaaaaactgacaaaccagtggccctctgacctaagttaaaat taagttactaattacaaatatgagataaaaaaaattacaaaatagaaaacagcgaaaaattcaaaaatatggaaaaagtt tgaaaaaatttaaatctgaagaatgcaactgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccttaagctttaagcttaagctttaagcttaagcgaagatgt gaccgagtaatccatggcatcgcattcatgtcgatttcgcagaagatgagaaggggcactattttattctcgtggacgca cattcccggtggcccgagattttctacatgccgcgaagtacatcgtcagcttcaacgatcactatcttaaaggaactatt tgccaaatattgcatgccggttcactgcgtcagcgataacgggtcgcagtttcgcagcgaagagtttatacgtttcctta agatgaatggtgtaaagcacgtaagagtagcaccttatcatgcagcaagtaatggtctggctgagcgcatggttcagtca ttcaagaaccacatgaaggtttgcaaggccagcaaactgtcgattcagcaacgaattgaaaacttcctgctaacgtgtcg gtcgacaaagcatcctactactggtagaactcacagtagtctgttcctgggacgcgagcttcgaactcggttatccctcc ttcgtccgaatgtgggagaaaaggtcatggattcccaggctaagcagaaggcaacacatgatgtgcacgcgaggatatta agagaattctaccctggcgacagggtccttgttaagaacctgagaaaagaggacacctggtggccaggctcggtggctga gcgtagtggatcgaggtcgtatgtggttgttccgattatgttctattaattattcataatgttttatattattctattta tagattttgaaaatatgcaattcagcttgtaagctgcaatatatttttataataaactatctatctatct |
Protein
Protein ID | aug_v2a.23586.t1 |
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Definition | - |
>aug_v2a.23586.t1 GNLGIAYDSLGDYRKAIEYYEKDLTIARETGDQAGEGRAYHNIGIGFFFLDEIENAMENFASAVNTFNSLRALLKSQDNW KINFRELYEATYTALWMLLLTMKKIDEALFAAEQGRAQTLSDNLLIQYKLDTSLLSATEYSKETVSHVLTKLSSPTLFLA IKGFTAHIWFLRKGKKIIFRKGRLEGDKREKDPLFALLQSALEKIVAKDTKRCEDRTFNDELDNECLLSIDVRGEGVGKP PLPSLDNPFKPFYDAVIDPILDMLELQDDELVIVSDGALCFIPWAAVIESIRIRIVPSLTSYQLILSAPQGHHRKKGALL VGNPCLKELKKPLNDLPCAQEEVEMIASILKTTPLTGIHATKAEVMKRMSSVGLIHIAAHGNERTGEIALSPNPGWSSKF PQRRDYILKMSDVQAANLRARLVVLSCCHSGRGRVLKGEGVVGIARAFLAAGARSVLVALWAIDDEATMVFMKSFYQHLK EGTTANAAVQQSMKFLRESEQFSDMKYWAPFQLIGEDVKIEFEADDDDEKPPFDQFDADSEDIESYLERLQEYFTAYDIT DDEDNAAKRRAILLTSIGSNCFRVLKDLAFPDAPNTKTFAQLATLLGEHFKPTRLKIAERYRFHSAVQQQGQSIADFVRE LKKLAGTCEFTNEQLNDNLRDRFICGLRSQHVKQKLLSRNFTLQEAVSEAIAQEAARKDVKDIADSYGGETSASGDSRGV NEVTTESHAVVFQSKEKVTLETENQKTQHSKISAPAVKVPVRIEGVDFQMEVDTGAAASFMNYTDYVRYFKYLALRPVNK AFHAYTGTPLDIAGQILVDVEYNDQQLTLTLLIVRANKYAPPLLGRAWMTKVRLDWKNLFSPSNGQFVVEPDNDERIVRL KERYAEIFKPELGTYKGAVIMHVYPNGKRRPIAYASRTLNEHEKRYGQIDKEALAIIFGLKRFHVYLYGRHFTILTGHKP LERIFGPKTAIPPLAAMGLQRWAIILAAFNYSIKFVPSKQNAVADALSRLPLPSTAGGESAVFKVEERLVDCLPITHKEI SHATQVDPVLSRVLEFVRSDWPQHIEDLLLKSFFHRRYELSIKQDCLVWGIRVVIPTRYQKDISDELHVGHLGIVRMKEL ARSYLWWPNIDSEIEQTVRNCSRCQQVRKPPAAAPLASXXXXXXXXXTLFIEEDEKGHYFILVDAHSRWPEIFYMPRSTS SASTITILKELFAKYCMPVHCVSDNGSQFRSEEFIRFLKMNGVKHVRVAPYHAASNGLAERMVQSFKNHMKVCKASKLSI QQRIENFLLTCRSTKHPTTGRTHSSLFLGRELRTRLSLLRPNVGEKVMDSQAKQKATHDVHARILREFYPGDRVLVKNLR KEDTWWPGSVAERSGSRSYVVVPIMFY* |