Gene
Gene Model ID | aug_v2a.23635 |
---|---|
Locus | scaf17066 : 1606 ... 11952 : + |
To GenomeBrowser | scaf17066:1606..11952 |
Genes list of scaffold | scaf17066 |
Manual annotation
Study field | Retrovirus |
---|---|
Gene name | Adi-Retrovirus-related 49-3 |
Description | DNA sequence of this gene model showed similarity with that of Adi-Retrovirus-related 49-1. This gene model contains RVT_1, THAP and Transposase_37 domains. |
mRNA evidence |
Transcript
Transcript ID | aug_v2a.23635.t1 |
---|---|
Definition | - |
>aug_v2a.23635.t1 agaagtctctgacagatcatgaactgttgcagagtccatttgccgacatcactgttattgacccccctcctcaaggtaag aaaactaatgtttaattatttaggctgtaaggctgttttgcattttcttacaaaatgccaaccttcaaatggcaattagt cagacaacatttacatactaaagaaaatcattgaatttcaacagttgatgcaatgactgtgttaaaatgaagttttatca gacatgtgtgaaggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnncggtattactacagaagggccagcctgtgcctcttgcctcgcgagctttaaccccaactgagttcaagtacgctca aattgagaaagagctactcgccattgttttcgcctgtgaaagattcaaagcgtatatgtttggtcatgatctcgtcaaca tggagacagatcagaagccacttgaggccattgtcctcaatcccctgcatgccgcccctctccaccggatgctgttgcgc ctgcaaaagttcaacttgcagatcaagtaccaaatggggacacagatgttcctagcggatacgctcagcagggctaacct acctgaggtggagacatgttcctctgtacatgacctcagatggttgacctcaaagcaaccctagccataagtggtgccag gtggcatctagtccatgggccaaaaccctaaaaatagggtgttcagtatcactcagggggacaaaggctattacacattt ttgaaatctccaattcctctagtttacgattttgcatgacagaagtctcggatgagtagctgtaaagagatatcacgtga caaactgacgtcactcagagtcactgtatattaaagagtaatatgcaagtggaatatatacatctttatcaagcctattt ttcgtattttgctaacatcatcaaaccttttaatgttgaaaatgcttgtacagtaagatttgaagctttctgatgcaaag tttcaacattatttttggttgtcactgcaatgcttaaacaatactattattttgtggccgaattctttaaaaaaaaaatg aaagagctacctttttaagttacatcaatgtcaaatgttatacaaaatgatagtagtaagtgggatttggcaacagtttg gtttaattgtcatgactactaaaggaaagccattatacggcaaattgcaaactcagcggccatcttgatccgccatcttg gatttggggatgcttgagtttctgtcatgaaaagtatgaaagtataaactaaaaagaactgcaaatcacccggatnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgttaatttataatttgacaagtgaaataacaatgttg ccagcctgagtccaggtttaagaataaaggggtgatttcaatacaatgtagctcatcaaatggttcaggaaattcatttt ggacaaaaggtgtgtgaaattattccctaatttctctcatcaacatttgggtacccaaatttgtcaagtaatattattat tatttggcaaatttccttaaaacgactgctattgtgccttttggacaagatcattaatttgacccagaaccttcatcttc ctaagggctatacagaagggctatctgggaaaaggaggaatttcagtagttattgaccagtcatttgacgcatcatcctt cagttctactcggttactctgcgggtttcaccgatgacactacttaagtaacataatgaactcatcgactcaaatttgcc acttactgttagttcttcttaccttgaagtatagtccctctaggtatcaaccttctcacattgacgatatgatctccacg atagaaagtgcttttcaagtctggcaatccagctaatttgtcaggagcatggttcttgttggcaaagtgaaaccagttaa catttgctagatggtgtaccttcatgctggaagctccatttgacccttgcaagtggacacgtgcagtgaaaaacaacgac aacgaggttcaaggatatttttacagggattggaaagttgaaaggctttcaactgaaactacacattgatgagcaagtcc agccagttgcgcaacccttatggcgtcctccattcagcttaaaggaaaagatcgagaagaagcttgatgaattattacga gaagacatcattgagcaagttgagggcccaacgccttgggtaaacccagttgtggtggtccctaagccaaatggtgatgt taggttatgtgtggacatgagatgcgccaacaaagccatcattcgtgaaaggcacccaattcccacaattgatgaagttc tagaggatatgcaagaagccagtgtgttcagtaaattagacctaaagtggggatatcatcaaatcgagcttagtgaagag tcccgtagcatcacgatgtttgtaacacacaaagggctgttcagatacaagagactgatgtttggtatcacatcagcgcc tgagaaatatcagcaagtgattcagcaagttttgaatggttgcagcgaaacagcaaacatctcggatgatattattgtct atggttctgatacagcggagcatgatgagcgactgggaaaagttctgaccaggttgagagacaagggtctcacactgaat gaagagaaatgcgtgtttcatatgccaaagctcacatttatgggcctagtactgtcacaacagggggtgggtccaactga agagaaaattaaggcagtgaatgaagctcgtgaaccacaaactgtgtcagaagtcaagagtttcttaggcctagtaaatt tcaatgcacggttcatacctgaccttgcgaaggtggcagagccattgagaaggttgacaaaaaagggagaaccatttatt tttggccttgagcagcaagtagcctttgcagacctgaagagacggttggctcaagcagacacattggggtattttgatcg tacagccagaacaaagataataattattacagatgcgagcccagttggcttgggggcggtcctacttgaagaacagaagg gaggaaaccgtgtgataagttatgcgagccgaggactttcagacgtagaacggcggtattcgcaaacagaaaaggaagcc ctagggattgtatgggcttgtgagaggtttcatgtgtatctttatggagtggattttgaactgtggacggaccacaaacc tctggaatttatctactcagtgcactccagaccctctgcgagaattgagaggtgggtcctgcggttacagccctactcat tttctgtgaagtatctaccaggacacatgaatattgctgatgcgttgtcgcaccttagcaagatcgaacaagcacagacc aggaatgtagcggaagagtatattagatttgttgctcacacggcagcgccacaagccatgaccactgaagaaatagaaga tgcattggcagtagatgaggagttagagtatgtgcgacagagtgtagagacaagaaattgggagaattccaattgcnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnngattcccattcaacttacaactgatttcatcaatactatataagcaagca tactttggattgggacagaccatagttagtagaggagactggttaggaaactcggcgaacttcaaagaaatatgtctttg tttacgaatttcaacgtcatgtgacattgaccctgcacaacattgttttcaagatggcgttcgctttcgaagtttatata gcgagtctttagcttcgcgtgttataaattgttttcggacttgtttagttaccaaattcgaaaggcgacttccttctgag ttgttctacgcgatgcctggcgaaaattgtgccgtttggggctgtggatcttgccggagaacgaaaggtcttggcatatt caagctgccagctgcgaaagatccagagcacaagacctggagagaagcatggcttggcgagattacgaagacccgtgaga aggacgccgagtttcagaagttgatagacaacgacacagtatttacttgcgagaaacacttcaaacctgacgagatatgt aagtagccgtacgggtattaaaaacttgaaatcaaatgtcacgctgttcctgtcgattttgcaaactccacaactgtttt taatggagtccttgccattaatttcaagtgaggttttgattattttctcctctgacttctttcagttgaatctgcgaaga tgacgaaaaagaaagttaaatttggggcgcttcctaccgagaacatgcccaagaaaagccacgagactcctaaacctcgt tcgcgaccagccagggaaattgtgaaagatattcctacttctatcgaaaagaggaaatattacacagggcttaaagatgt gttcaaaaggatcaaggctttaaaaaccatcaatgagtggatagtggcggaacgcattgacagagttattttacgaaaga tgaaggattgttttcagcttccagaatatgaactgatcattgatgacagactaggatacactatttcagtttatggatgg ttcttaccagaggatcacgaactctatacaaatagtctaaggtctgtgaacaatgtgacagtctctgatctaaaaagaaa tatagaatgtcatcatatttgtcctggagtgaatcccaaagagttaactgaagaagtaattccacatgtcattccaaaga ttgtggatcccttgtacagtgacgatgaacgtggtttagacatgttcccaaacaaacagttctggcgaccttctgattgt agtttactctgcagcccaacatcacagctctgcacagcttgtatggaatattcacatgctagtgacctcaaagcaagagc aaagcagaggaggctgtcagaaccagcacacatcaaggcacctgtggcaagtacagcaccagaaagactcgagctcacat tgcagatgcaacggctgagctagagcaccagctggacgaaatgaggcaggagatcacaaaatcttcactcctggtagatc acaaactaagtaatgatctaacttcaatacttgatgactgtagttcaggtatgacaccattcatgaatctgttttggcag cagcagaaaaaattgttaaaaagcagtgcgactggtatgcgatatcatcccatgattatccgattctgtttgtcactggc tgcaaagtctccatcatgttatgaagaactaaggaacagcaaagttcttgtgttgccaagtcagcgacgactgagagatt acaggaatgctatccggccccagagagggttccaagacgaggttgtcaaggtgttgcagtccaaaacagagtcctacttt gatgtgcagagatacgtcatcctattatttgacaagatgaagatcatggcaaacctagttttagataaagtgactggcga acttataggattcactgatctgggtgacccagacttgaattttggatctctggagaaggttgatgagattgcctcacatg ctttagcattcctggtgtgtggggtatacacggagctcaagttctgcttggctcattttgcaaccacaggtgtcattgca gcccagttgatgccccttttctgggaagcagttgccattcttgagaccacctgcaatctgtgggtgattgctgccacctc cgatggagcatctccaaacagaagattctaccgcttgcacaagccactggatggaggtgtagacactgatgtatgctacc gcaccatcaatcaatttgcacctcatcggttcctgtatttcttttctgatgccccacatttggtaaagacaaccagaaac tgtttgtcacactctggatctggtacttgctcacgctacatgtggaacaatgggaattatatcctatggcagcatatatc gcaattgttttaccaagacattgacagtgggttaaagctgctaccaaagctgacctatgaccacatccacctcacttcat attctgtgatgcgagtgaacctggctgcacaggttcttagtgcatcggtggctgcagttattaaggaatttggacctcct gaggcagtggaaactgcaaagctctgtgagatgatggatgccttttttgattgtctcaatgtacgcagcactactgagta tcaaaagaagcgtaagccgttccttgcaccttacagatctggtgatgatgaaaggtaagtttgatatctatgcagctcag tataagtacatgtagatttctaatccagtgttgcagattgggcactggtaactcctgcaattcttaatattcataaaaca cattctcctgactgaaaactagccattttcttgtttaagttgggagaatttgttaaaggattgctgtaatttcccttcgc tgatcattttattaactctcatatctttcaatgattgatgctggtcactcatccaaagcattttttttcccttatttatt gatattaaaaacatgcaatctattttaaacatttgaaactggagctcttgacaaacatttgaaactgatctcagaaatag ctaaggttagtcaagttactattctcttttcattcttatttgtttatgtttttctgatttcaggtttcagttcctgattg acttcctggactacctaaggctttggaaagagagtactgacaaccgaccaggaaacttcacacagaatgctagaggccgc atgttcctgtcctggcagacatatgagggcataaagatgacagctcattcagctattgaggctaccaagttccttctcca ggaaggtacagagtttgtgctcaccgagcggttttgtcaggatccagtggagaagtacttcgggaatcaacgcaaacttg gaagacgcagtgacaatcctgacatccatgcatttggatataatgccaacaccctcagaattcagcggatggtttcctgt caaagtggcaacacaagaggcaggaaagacaaacgaagagcatgggagcaggttacagatgcagtattgccatgcaggaa aaaaattaaacatatttgactttagtagatctttgagctacatgtactgtaactgtagtgttgatgttacatgtatttat acaggaaaataatttctgccaatttaa |
Protein
Protein ID | aug_v2a.23635.t1 |
---|---|
Definition | - |
>aug_v2a.23635.t1 MRCANKAIIRERHPIPTIDEVLEDMQEASVFSKLDLKWGYHQIELSEESRSITMFVTHKGLFRYKRLMFGITSAPEKYQQ VIQQVLNGCSETANISDDIIVYGSDTAEHDERLGKVLTRLRDKGLTLNEEKCVFHMPKLTFMGLVLSQQGVGPTEEKIKA VNEAREPQTVSEVKSFLGLVNFNARFIPDLAKVAEPLRRLTKKGEPFIFGLEQQVAFADLKRRLAQADTLGYFDRTARTK IIIITDASPVGLGAVLLEEQKGGNRVISYASRGLSDVERRYSQTEKEALGIVWACERFHVYLYGVDFELWTDHKPLEFIY SVHSRPSARIERWVLRLQPYSFSVKYLPGHMNIADALSHLSKIEQAQTRNVAEEYIRFVAHTAAPQAMTTEEIEDALAVD EERLPSELFYAMPGENCAVWGCGSCRRTKGLGIFKLPAAKDPEHKTWREAWLGEITKTREKDAEFQKLIDNDTVFTCEKH FKPDEIFESAKMTKKKVKFGALPTENMPKKSHETPKPRSRPAREIVKDIPTSIEKRKYYTGLKDVFKRIKALKTINEWIV AERIDRVILRKMKDCFQLPEYELIIDDRLGYTISVYGWFLPEDHELYTNSLSKSKAEEAVRTSTHQGTCGKYSTRKTRAH IADATAELEHQLDEMRQEITKSSLLVDHKLSNDLTSILDDCSSGMTPFMNLFWQQQKKLLKSSATGMRYHPMIIRFCLSL AAKSPSCYEELRNSKVLVLPSQRRLRDYRNAIRPQRGFQDEVVKVLQSKTESYFDVQRYVILLFDKMKIMANLVLDKVTG ELIGFTDLGDPDLNFGSLEKVDEIASHALAFLVCGVYTELKFCLAHFATTGVIAAQLMPLFWEAVAILETTCNLWVIAAT SDGASPNRRFYRLHKPLDGGVDTDVCYRTINQFAPHRFLYFFSDAPHLVKTTRNCLSHSGSGTCSRYMWNNGNYILWQHI SQLFYQDIDSGLKLLPKLTYDHIHLTSYSVMRVNLAAQVLSASVAAVIKEFGPPEAVETAKLCEMMDAFFDCLNVRSTTE YQKKRKPFLAPYRSGDDERFQFLIDFLDYLRLWKESTDNRPGNFTQNARGRMFLSWQTYEGIKMTAHSAIEATKFLLQEG TEFVLTERFCQDPVEKYFGNQRKLGRRSDNPDIHAFGYNANTLRIQRMVSCQSGNTRGRKDKRRAWEQVTDAVLPCRKKI KHI* |