Gene
Gene Model ID | aug_v2a.24565 |
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Locus | scaf18476 : 323 ... 2055 : - |
To GenomeBrowser | scaf18476:323..2055 |
Genes list of scaffold | scaf18476 |
Manual annotation
Study field | Retrovirus |
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Gene name | Adi-Retrovirus-related 2-20 |
Description | DNA sequence of this gene model showed similarity with that of Adi-Retrovirus-related 2-19. This gene model has Asp_protease, RVP and Spuma_A9PTase domain. |
mRNA evidence |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.24565.t1 | gi|390340454|ref|XP_003725248.1| | 2.0e-14 | |
aug_v2a.24565.t1 | gi|585695664|ref|XP_006822064.1| | PREDICTED: uncharacterized protein LOC100379030 [Saccoglossus kowalevskii] | 4.0e-12 |
aug_v2a.24565.t1 | gi|675189047|ref|XP_008903408.1| | hypothetical protein PPTG_10468 [Phytophthora parasitica INRA-310] | 3.0e-11 |
aug_v2a.24565.t1 | gi|676430208|ref|XP_009045851.1| | hypothetical protein LOTGIDRAFT_171408 [Lottia gigantea] | 5.0e-10 |
aug_v2a.24565.t1 | gi|675211623|ref|XP_008914696.1| | hypothetical protein PPTG_24338 [Phytophthora parasitica INRA-310] | 2.0e-09 |
Transcript
Transcript ID | aug_v2a.24565.t1 |
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Definition | - |
>aug_v2a.24565.t1 aagtcgcccccgttgcgttggcaaatagagctgtgatgggggcgaattcaaatgagaaaatttgtagtcagatttcacta acggatgcgagtttagtcgataaaaaagccttcgtcccgacttgttctgctgaccgaactgaagctagttgtagttttga acctggtgagaagcaatcaccaccgtctgatgatttatcagaacaaattgtctgcctttcgaggagcgttttagctgtgt ttatcctcttgctaagtattattatcagtttgttgaaattggttcaatttattttgggagaatttgtccgaacagttgaa aaaccacgaccgccaaaacaaccctcaagctgtgacgttgaagagtcattgcaagtgtccgactcttgcggagacgataa agtggcacgtgtgaacgttcagtcagttgaagtagatcctcaagattttcaagtggtccaagagaaacaaattgaagtag agacagcaacgacttatcatgtgttttccggtgaagacgcaacagtctcgaactcgagtcctttagattccaatgaggaa ttaattgttctgtcacccgagattgtcaaatcgactgaagtcaccactcaaagtgagagagcgaaagttgacccacagtt tagtgattgtgcttatcagaaggaaaacattgatacgtctattaggtcaatggacagcgtgagttttcagttgaagtcta gtgattttactgtttcagtaggtattgcgaatttcaaatttcaagctttgttagacacaggcgctgccgttactgcagtg agtgcgcgcatttggagggaatatttaattgatattcaccctaatctgaatccgcccgctcgcggtgctgtcacaacagt agatggccgcgaactagccacgttgggaacgctagttttgtcttttgaaattggtgctgattcttttcctgtgaaggctc atgtgatggaaggactggcttttgatgtgattattggaagggattttctcaaagagttttgctccggaatcgatttcatg aataacgaagttgaatttgtacacgctgacgatccgcttccctttggttttagtgacattgatgatgacccccatgtaga tgattcagaatttgttagttccgtgcatgccgactattctttcacgatatcgccgcgatctgaaaagattgtccttggca aattgaaaattaagccggcgaatggacagaatggagacgcttgtggcatagttataccaaggtctaacctgcctcagcgt tattcaattttcggtgcagcagagattgttaaggtttcagagaatggtacgattccgatcagattagtcaatccgtctgc ccaaccagttaaggtattccgcgagactaggctaggcgatttttcgagcgttggagatgaagttgaaacatttgaattga atgaatttccccaggaagtcttgtctgcgatgtctgagggtcaaacgaaaaacgaattgcctcatcacaattattcagat ttacctgatttgtcagacagcattttgaacgatgatgatagaattaagtttcgtgagttatttcggtgctaccgtgatgt ttttgcttttactggtgaccaacttggtaaaacttctctcgtccaacacgtgatcgacacaggtgatgctatgcctatta agcaaaggccatatcgaaccagtcctcgttgtaaacaagaaattgatcgtcag |
Protein
Protein ID | aug_v2a.24565.t1 |
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Definition | - |
>aug_v2a.24565.t1 MGANSNEKICSQISLTDASLVDKKAFVPTCSADRTEASCSFEPGEKQSPPSDDLSEQIVCLSRSVLAVFILLLSIIISLL KLVQFILGEFVRTVEKPRPPKQPSSCDVEESLQVSDSCGDDKVARVNVQSVEVDPQDFQVVQEKQIEVETATTYHVFSGE DATVSNSSPLDSNEELIVLSPEIVKSTEVTTQSERAKVDPQFSDCAYQKENIDTSIRSMDSVSFQLKSSDFTVSVGIANF KFQALLDTGAAVTAVSARIWREYLIDIHPNLNPPARGAVTTVDGRELATLGTLVLSFEIGADSFPVKAHVMEGLAFDVII GRDFLKEFCSGIDFMNNEVEFVHADDPLPFGFSDIDDDPHVDDSEFVSSVHADYSFTISPRSEKIVLGKLKIKPANGQNG DACGIVIPRSNLPQRYSIFGAAEIVKVSENGTIPIRLVNPSAQPVKVFRETRLGDFSSVGDEVETFELNEFPQEVLSAMS EGQTKNELPHHNYSDLPDLSDSILNDDDRIKFRELFRCYRDVFAFTGDQLGKTSLVQHVIDTGDAMPIKQRPYRTSPRCK QEIDRQ |