Genome browser
OIST Marine Genomics Unit since 2008
Collagen: Total 27 genes are annotated
Gene model
Gene name
Description
Blast top hit
Blast2GO annotation
Scaffold
aug_v2a.14128
Collagen Domain Containing Protein1
gi|533115509|ref|XP_0053733...
collagen alpha-1(III) chai...
collagen alpha-1 chain
scaf5864
aug_v2a.02835
Collagen Domain Containing Protein10
gi|260835986|ref|XP_0026129...
hypothetical protein BRAFLD...
collagen alpha 2 type v
scaf961
aug_v2a.04536
Collagen Domain Containing Protein11
gi|542253755|ref|XP_0034578...
collagen alpha-1(XI) chain...
–
scaf1670
aug_v2a.15033
Collagen Domain Containing Protein12
gi|471362782|ref|XP_0043719...
collagen alpha-2(IX) chain...
–
scaf6336
aug_v2a.13992
Collagen Domain Containing Protein13
gi|498971993|ref|XP_0045477...
collagen alpha-1(II) chain...
collagen alpha-1 chain-like isoform x1
scaf5787
aug_v2a.22680
Collagen Domain Containing Protein14
gi|514059381|ref|YP_0081234...
triple helix repeat-containing collagen
scaf15786
aug_v2a.10950
Collagen Domain Containing Protein15
gi|678004726|ref|XP_0090788...
collagen alpha-1(I) chain,...
–
scaf4222
aug_v2a.04537
Collagen Domain Containing Protein16
gi|410895143|ref|XP_0039610...
collagen alpha-1(I) chain-...
–
scaf1670
aug_v2a.02836
Collagen Domain Containing Protein17
gi|170029346|ref|XP_0018425...
conserved hypothetical prot...
collagen alpha-1 chain-like
scaf961
aug_v2a.13777
Collagen Domain Containing Protein18
gi|501958499|ref|WP_0126772...
cell surface protein [Strep...
–
scaf5668
aug_v2a.13458
Collagen Domain Containing Protein19
gi|930050|emb|CAA32030.1|
alpha-1 type 2 collagen (71...
collagen alpha-1 chain isoform x6
scaf5485
aug_v2a.13459
Collagen Domain Containing Protein2
gi|557759804|ref|XP_0051796...
collagen alpha-1(I) chain-...
–
scaf5485
aug_v2a.09818
Collagen Domain Containing Protein20
gi|426352697|ref|XP_0040438...
collagen alpha-2(XI) chain...
triple helix repeat-containing collagen
scaf3764
aug_v2a.04538
Collagen Domain Containing Protein21
gi|449676568|ref|XP_0021648...
collagen alpha-2 chain isoform x2
scaf1670
aug_v2a.02816
Collagen Domain Containing Protein22
gi|704259258|ref|XP_0101504...
LOW QUALITY PROTEIN: colla...
collagen alpha-1 chain
scaf950
aug_v2a.23368
Collagen Domain Containing Protein23
gi|688604984|ref|XP_0092935...
collagen alpha-1(I) chain-...
–
scaf16719
aug_v2a.22704
Collagen Domain Containing Protein24
gi|326670519|ref|XP_694040.5|
collagen alpha-1(IV) chain...
collagen alpha-1 chain
scaf15818
aug_v2a.15915
Collagen Domain Containing Protein25
gi|529440227|ref|XP_0052398...
collagen alpha-2(IX) chain...
collagen alpha-1 chain
scaf7165
aug_v2a.17219
Collagen Domain Containing Protein26
gi|699587818|ref|XP_0098652...
LOW QUALITY PROTEIN: colla...
collagen alpha-1 chain-like
scaf8510
aug_v2a.10344
Collagen Domain Containing Protein27
gi|637311907|ref|XP_0081109...
collagen alpha-6(VI) chain...
–
scaf3970
aug_v2a.09815
Collagen Domain Containing Protein3
gi|504172421|ref|XP_0045957...
collagen alpha-3(V) chain ...
collagen alpha-2 chain isoform x1
scaf3764
aug_v2a.09052
Collagen Domain Containing Protein4
gi|701289826|ref|XP_0100143...
collagen alpha-1(V) chain,...
–
scaf3461
aug_v2a.17481
Collagen Domain Containing Protein5
gi|395532734|ref|XP_0037684...
collagen alpha-1(I) chain ...
collagen alpha-1 chain isoform 1
scaf8847
aug_v2a.17022
Collagen Domain Containing Protein6
gi|512895066|ref|XP_0049235...
collagen alpha-1 chain-like
scaf8291
aug_v2a.10003
Collagen Domain Containing Protein7
gi|392901970|ref|NP_0012558...
COL-135, isoform a [Caenorh...
–
scaf3826
aug_v2a.21945
Collagen Domain Containing Protein8
gi|753847608|ref|WP_0416032...
hypothetical protein, parti...
–
scaf14657
aug_v2a.13392
Collagen Domain Containing Protein9
gi|701363661|ref|XP_0099618...
collagen alpha-2(V) chain-...
pro-alpha-1 type ii collagen
scaf5445
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