Gene
Gene Model ID | pfu_aug1.0_11315.1_68316 |
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Locus | scaffold11315.1 : 6850 ... 17895 : - |
To GenomeBrowser | scaffold11315.1:6850..17895 |
Genes list of scaffold | scaffold11315.1 |
Synonym | pfu_aug2.0_370.1_00663 |
Manual annotation
Study field | Metabolism |
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Gene name | UDP-glucose 4-epimerase |
Description | Sequence is almost identical to pfu_aug1.0_18273.1_54476 |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_11315.1_68316.t1 | 1 | 1 | adh_short | 4 | 134 | 2.1e-07 | 31.0 | 2.9e-10 | 4.2e-07 | 30.0 |
pfu_aug1.0_11315.1_68316.t1 | 1 | 1 | Epimerase | 6 | 254 | 0.0 | 163.3 | 0.0 | 0.0 | 162.6 |
pfu_aug1.0_11315.1_68316.t1 | 1 | 1 | Polysacc_synt_2 | 6 | 184 | 1.1e-11 | 44.1 | 8.0e-14 | 1.2e-10 | 40.8 |
pfu_aug1.0_11315.1_68316.t1 | 1 | 1 | RmlD_sub_bind | 6 | 179 | 1.9e-10 | 40.1 | 2.1e-13 | 3.1e-10 | 39.4 |
pfu_aug1.0_11315.1_68316.t1 | 1 | 1 | NAD_binding_10 | 6 | 198 | 2.7e-09 | 37.2 | 2.8e-12 | 4.1e-09 | 36.7 |
pfu_aug1.0_11315.1_68316.t1 | 2 | 1 | 3Beta_HSD | 7 | 161 | 8.7e-13 | 47.5 | 1.5e-15 | 2.3e-12 | 46.2 |
pfu_aug1.0_11315.1_68316.t1 | 1 | 1 | NAD_binding_4 | 8 | 194 | 6.0e-10 | 38.4 | 1.7e-11 | 2.6e-08 | 33.1 |
pfu_aug1.0_11315.1_68316.t1 | 2 | 2 | 3Beta_HSD | 232 | 256 | 8.7e-13 | 47.5 | 0.57 | 850.0 | -1.6 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_11315.1_68316.t1 | gi|326432782|gb|EGD78352.1| | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-4cell | 1 |
>Adult tissues |
Transcript
Transcript ID | pfu_aug1.0_11315.1_68316.t1 |
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Definition | - |
>pfu_aug1.0_11315.1_68316.t1 atgagtaaagggagtatactcctgacaggaggggcagggtttgtaggcagccatactgtgatagagtttatccaagcagg atattctgttgtagtcttggacaaccttgtcaatgcaagcatggagagcataaaacgagttgagaaaataacaggtaaag aaattccagccgtcaatgtggatttactgaacaaagaggcattaacagatttattttctaaacacaagtttactagcgta gttcactttgctggcctgaaggctgtcggagaatcttgtcagttacccctcctgtactaccatactaatataggagcaac catcaatctgttagaggtgatgaaatcttttgatgtgaagaatatgattttctcaagttccgccacggtatacggtactc cgcagtatttacctatagacgaaaaacatcctgttggtggttgtaccaacccatacggcaaaacaaaatatttcattgaa gaaatcctcagagacctagccaaggcagaacctgactggaacattgttatacttcgttactttaatcctgtcggggccca tgagtctggtcaaataggtgaggatccacagggtgtgcccaataatcttatgccatttatctcacaagtagccgtaggta aaaggaaggaattgaacgtttacggtgatgattacgacacacctgatggtacaggagtaagagactatatacatgtggtt gatttagctaaaggtcacgtggcagctcagacaaaaatagaaactaaatgtggatgtaagccagaatttgcttatgtcaa cgacacagcaagccctgttgtggtactagcaaatcctggacaatctggttggatttccttgtccctgatcacatctggtg atagattctattag |
Protein
Protein ID | pfu_aug1.0_11315.1_68316.t1 |
---|---|
Definition | - |
>pfu_aug1.0_11315.1_68316.t1 MSKGSILLTGGAGFVGSHTVIEFIQAGYSVVVLDNLVNASMESIKRVEKITGKEIPAVNVDLLNKEALTDLFSKHKFTSV VHFAGLKAVGESCQLPLLYYHTNIGATINLLEVMKSFDVKNMIFSSSATVYGTPQYLPIDEKHPVGGCTNPYGKTKYFIE EILRDLAKAEPDWNIVILRYFNPVGAHESGQIGEDPQGVPNNLMPFISQVAVGKRKELNVYGDDYDTPDGTGVRDYIHVV DLAKGHVAAQTKIETKCGCKPEFAYVNDTASPVVVLANPGQSGWISLSLITSGDRFY |