Gene
Gene Model ID | pfu_aug1.0_120090.1_21080 |
---|---|
Locus | scaffold120090.1 : 1 ... 1182 : + |
To GenomeBrowser | scaffold120090.1:1..1182 |
Genes list of scaffold | scaffold120090.1 |
Synonym | pfu_aug2.0_18065.1_19915 |
Manual annotation
Study field | Reproduction |
---|---|
Gene name | Pf-vasa-like protein |
Description | reciprocal BLASTP best hit to NCBI Accession AAR37337.1 (Crassostrea gigas vasa-like protein). DEAD/DEAH box domain. Continues from pfu_aug1.0_225167.1_35845, connects to pfu_aug1.0_13522.1_61224.t1. |
mRNA evidence |
Study field | Reproduction |
---|---|
Gene name | Pifuc-vasa-like |
Description | C terminal part of the DEAD-box helicase domain. Reciprocal BLAST best hit to NCBI AAR37337 (Crasostrea gigas). |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_120090.1_21080.t1 | 1 | 1 | DEAD | 2 | 107 | 6.8e-25 | 87.5 | 1.0e-28 | 7.6e-25 | 87.3 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_120090.1_21080.t1 | gi|194068383|dbj|BAG55012.1| | vasa [Saccostrea kegaki] | 0.0 |
Transcript
Transcript ID | pfu_aug1.0_120090.1_21080.t1 |
---|---|
Definition | - |
>pfu_aug1.0_120090.1_21080.t1 gccaggaagtttgcccacggcaccatgctacggcctgtggtactgtatggagggacctctgtaggctatcagatacggca ggtcgaacagggaaccaatatactggtgggcacaccaggaaggttgatggatatcattggcaaaggaaagataagcttgg aaaagatcaagtatctgatcctagatgaagcagacagaatgctcgacatgggatttggtccagaaattaagaagattgtg actgagatgggaatgccgtcaaagacagacagacagaccctgatgttcagtgctaccttccccaaggaagtacaggagat agctgcggagtacctgaaccactacctgttccttactgtagggagggtaggtggag |
Protein
Protein ID | pfu_aug1.0_120090.1_21080.t1 |
---|---|
Definition | - |
>pfu_aug1.0_120090.1_21080.t1 ARKFAHGTMLRPVVLYGGTSVGYQIRQVEQGTNILVGTPGRLMDIIGKGKISLEKIKYLILDEADRMLDMGFGPEIKKIV TEMGMPSKTDRQTLMFSATFPKEVQEIAAEYLNHYLFLTVGRVGG |