Gene
Gene Model ID | pfu_aug1.0_12059.1_24977 |
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Locus | scaffold12059.1 : 21816 ... 27387 : + |
To GenomeBrowser | scaffold12059.1:21816..27387 |
Genes list of scaffold | scaffold12059.1 |
Synonym | pfu_aug2.0_1732.1_08541 |
Manual annotation
Study field | Transcription Factors |
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Gene name | Pfu-HEY |
Description | Best hit to AAL06278 basic helix-loop-helix protein OAF1 [Homo sapiens] with 4e-66 by a BLASTP search against NCBI Homo sapiens nr database. The predicted protein has a Hairy_orange domain, but not a YRPW motif. This annotation is based on NJ, ML, and BI. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_12059.1_24977.t1 | 1 | 1 | HLH | 37 | 86 | 1.7e-16 | 59.6 | 7.0e-20 | 3.5e-16 | 58.6 |
pfu_aug1.0_12059.1_24977.t1 | 1 | 1 | Hairy_orange | 106 | 148 | 7.6e-14 | 51.1 | 2.8e-17 | 1.4e-13 | 50.3 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_12059.1_24977.t1 | gi|259013448|ref|NP_001158467.1| | hairy/enhancer-of-split related with YRPW motif 1-like [Saccoglossus kowalevskii] | 0.0 |
Transcript
Transcript ID | pfu_aug1.0_12059.1_24977.t1 |
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Definition | - |
>pfu_aug1.0_12059.1_24977.t1 atgaagcgaagtcttagtgattcagaaggggaggactgttacgatgatgctctcaaagcgagttcaccatcacaaagttg tcagattacagacaggaaaaagaggagaggtgtaatagaaaaacgaaggagggatagaataaacaacagtctatctgagt taagaagacttgtgccatcagcattcgagaaacaaggatctgcaaagttagagaaagctgagattctgcagatgacagta gaccatctgaagatactacatcaaaaagggataaacagctataattaccctgatccccacactctagcggtggattacag aagtgttggattcagggaatgtgccgcagaggttgcgaggtatctcgttgccgtcgaaggacttgatttgcaagatccgt tacgcatgcgtcttctgagtcatttacaaagctactcagctcaaagagaggctgcgactaaagcctcgcttcagaattct tcatggagtcctatgccatcgcatccgacaatcaatagtcagtattccgggagtagtatgtcgtcaatgggatctatgat ttcgtcacaacttccgggccaatcagatttcacatcaaacaatcattcatctcaaggattatcgtccttatcatacagtg aatctcgcgtgagtcttcctgacatatcatcttcgtcacttcatggtaacatgagaattcaatcaagtgtaaatatttcg tcacattcccaaatgcaaaatatgaacagtacaggacaagacgtttctcaagcgcttattccctcttttcctcaattgaa caatccttttcctgtgtctttgaatgtcaatcccatgtcttcgatgatgtcacaaaatggagtaattacaatggttccca ggccgtcaaaccttatcgaccctggggaagtgaaattgcttattgatcataagaaaatgctttctcctcatcaaaaatat ttatttttgtaa |
Protein
Protein ID | pfu_aug1.0_12059.1_24977.t1 |
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Definition | - |
>pfu_aug1.0_12059.1_24977.t1 MKRSLSDSEGEDCYDDALKASSPSQSCQITDRKKRRGVIEKRRRDRINNSLSELRRLVPSAFEKQGSAKLEKAEILQMTV DHLKILHQKGINSYNYPDPHTLAVDYRSVGFRECAAEVARYLVAVEGLDLQDPLRMRLLSHLQSYSAQREAATKASLQNS SWSPMPSHPTINSQYSGSSMSSMGSMISSQLPGQSDFTSNNHSSQGLSSLSYSESRVSLPDISSSSLHGNMRIQSSVNIS SHSQMQNMNSTGQDVSQALIPSFPQLNNPFPVSLNVNPMSSMMSQNGVITMVPRPSNLIDPGEVKLLIDHKKMLSPHQKY LFL |