Gene
Gene Model ID | pfu_aug1.0_12166.1_61007 |
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Locus | scaffold12166.1 : 18057 ... 23015 : - |
To GenomeBrowser | scaffold12166.1:18057..23015 |
Genes list of scaffold | scaffold12166.1 |
Synonym | pfu_aug2.0_204.1_13789 |
Manual annotation
Study field | ribosomal |
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Gene name | Pfu-000018 |
Description | NCBI blastx best hit to CAQ63457.1. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_12166.1_61007.t1 | 1 | 1 | Ribosomal_60s | 112 | 203 | 8.4e-24 | 83.7 | 7.6e-28 | 1.1e-23 | 83.3 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_12166.1_61007.t1 | gi|159145748|gb|ABW90411.1| | putative ribosomal protein P2 [Barentsia elongata] | 3.0e-26 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-4cell | 1 |
8-16cell | 1 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
adductorMuscle | 3 |
mantle | 1 |
mantleEdge | 1 |
mantlePallium | 1 |
pearlSac | 1 |
Transcript
Transcript ID | pfu_aug1.0_12166.1_61007.t1 |
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Definition | - |
>pfu_aug1.0_12166.1_61007.t1 atgcccccctctcggcagttggggttatttgcagaggtcttttatgtcgaaaagtcttcatgtcgaaaatgtcaaatcgt gtatcccagcgtgcaactcaaaaccttcttcctttcaaccatttccattacacagaaaaggtgtgactacgtttcgtgtc gacgaagacttaaaacgatgacatcttgttttcaatgtggttttaagacttacagcattttattgaaaatgaaagtggaa ccacgtggttttcgactttttcaagtgattgtgaaagaaagaatgcgttacgtagcagcctacttgctcgccagcttggg aggtaatactgccccctcagcagcagatctggagaagatcatagggtctgtaggcattgaagcagaggctgataaagtca agaaaataatcggagaactcaagggaaaagatctagaagaactcatcactgaaggtcagtccaagttggcgtcagtacca tcaggtggcgctgtggctgccggaggtggtggtgccgcaccggctgctgaagcaaaggaagagaagaaagaagagaagaa accagagccagaatctgagagtgacgacgatatgggattcggactctttgattaa |
Protein
Protein ID | pfu_aug1.0_12166.1_61007.t1 |
---|---|
Definition | - |
>pfu_aug1.0_12166.1_61007.t1 MPPSRQLGLFAEVFYVEKSSCRKCQIVYPSVQLKTFFLSTISITQKRCDYVSCRRRLKTMTSCFQCGFKTYSILLKMKVE PRGFRLFQVIVKERMRYVAAYLLASLGGNTAPSAADLEKIIGSVGIEAEADKVKKIIGELKGKDLEELITEGQSKLASVP SGGAVAAGGGGAAPAAEAKEEKKEEKKPEPESESDDDMGFGLFD |