Gene
Gene Model ID | pfu_aug1.0_13057.1_17948 |
---|---|
Locus | scaffold13057.1 : 1756 ... 5158 : + |
To GenomeBrowser | scaffold13057.1:1756..5158 |
Genes list of scaffold | scaffold13057.1 |
Synonym | pfu_aug2.0_59.1_30106 |
Manual annotation
Study field | other developmental genes |
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Gene name | barH-like 1 |
Description | High BLAST hits to various organisms' BarH-like1 gene. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_13057.1_17948.t1 | 1 | 1 | Homeobox | 134 | 190 | 2.4e-21 | 75.0 | 5.2e-25 | 3.9e-21 | 74.4 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_13057.1_17948.t1 | gi|348518034|ref|XP_003446537.1| | PREDICTED: homeobox protein BarH-like 1-like [Oreochromis niloticus] | 5.0e-38 |
Transcript
Transcript ID | pfu_aug1.0_13057.1_17948.t1 |
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Definition | - |
>pfu_aug1.0_13057.1_17948.t1 atgtttccgaacgaagcgaatattcaacgtcagcgaccccagacgacaacgtcatctttttacatcagagacattttaag gtctgattcaggaggtctgacgtcatcacctaagtttccaggttaccaacatccgattcaaccggaaggaactacatatt atcaaaatggatacgtgtcgtctgttccggatcagattccttcaaatccaatcccatgttccacagtaccttactctaca atctactttccatcaccgcttctaaagaattcgttttatacaggtgttccctttgatggaatgatagatattcgatcaac ggacactgttccacttccagtgtacattcgttcacggtcaccaaacggaagcgatgctttttgccggatgaaaaaatgtc gtcgcagccgaaccgtgtttacagacttacaactcatgggcctggagaaaagatttgaatcccagaaatatttatcaacc ccggataggattaccctggcggagtctctgggattgtcgcaagtacaagttaaaacctggtatcagaacaggcggatgaa gtggaagaaaacggttttggacgagtgtggagaacaagtgccgataaaaccaaagggtcgtccgaagaaagaaccaatca gaaacgattccgagcctgctaaggaaccggaaagcaatgtggagaacgcgcaatga |
Protein
Protein ID | pfu_aug1.0_13057.1_17948.t1 |
---|---|
Definition | - |
>pfu_aug1.0_13057.1_17948.t1 MFPNEANIQRQRPQTTTSSFYIRDILRSDSGGLTSSPKFPGYQHPIQPEGTTYYQNGYVSSVPDQIPSNPIPCSTVPYST IYFPSPLLKNSFYTGVPFDGMIDIRSTDTVPLPVYIRSRSPNGSDAFCRMKKCRRSRTVFTDLQLMGLEKRFESQKYLST PDRITLAESLGLSQVQVKTWYQNRRMKWKKTVLDECGEQVPIKPKGRPKKEPIRNDSEPAKEPESNVENAQ |