Gene
Gene Model ID | pfu_aug1.0_1306.1_22530 |
---|---|
Locus | scaffold1306.1 : 17217 ... 24555 : - |
To GenomeBrowser | scaffold1306.1:17217..24555 |
Genes list of scaffold | scaffold1306.1 |
Synonym | pfu_aug2.0_108.1_26854 |
Manual annotation
Study field | structural proteins |
---|---|
Gene name | troponin-C |
Description | Troponin C full sequence. BLAST top hit to AB049962(Todarodes pacificus). |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_1306.1_22530.t1 | 4 | 1 | EF-hand_1 | 15 | 41 | 1.4e-24 | 83.4 | 1.5e-07 | 0.00023 | 20.2 |
pfu_aug1.0_1306.1_22530.t1 | 2 | 1 | EF-hand_7 | 15 | 71 | 3.5e-21 | 75.0 | 6.9e-09 | 1.0e-05 | 25.5 |
pfu_aug1.0_1306.1_22530.t1 | 4 | 1 | EF-hand_6 | 15 | 40 | 7.7e-20 | 68.9 | 7.7e-08 | 0.00011 | 21.7 |
pfu_aug1.0_1306.1_22530.t1 | 3 | 1 | EF-hand_5 | 16 | 37 | 1.5e-11 | 43.1 | 7.8e-07 | 0.0012 | 18.1 |
pfu_aug1.0_1306.1_22530.t1 | 2 | 1 | EF-hand_9 | 17 | 69 | 1.7e-14 | 53.4 | 8.9e-08 | 0.00013 | 21.7 |
pfu_aug1.0_1306.1_22530.t1 | 4 | 1 | EF-hand_8 | 18 | 34 | 2.1e-14 | 52.8 | 0.0044 | 6.5 | 6.4 |
pfu_aug1.0_1306.1_22530.t1 | 4 | 2 | EF-hand_1 | 50 | 75 | 1.4e-24 | 83.4 | 0.0052 | 7.7 | 6.0 |
pfu_aug1.0_1306.1_22530.t1 | 4 | 2 | EF-hand_6 | 52 | 75 | 7.7e-20 | 68.9 | 0.0042 | 6.3 | 6.9 |
pfu_aug1.0_1306.1_22530.t1 | 4 | 2 | EF-hand_8 | 55 | 76 | 2.1e-14 | 52.8 | 0.35 | 520.0 | 0.3 |
pfu_aug1.0_1306.1_22530.t1 | 4 | 3 | EF-hand_8 | 62 | 102 | 2.1e-14 | 52.8 | 0.0081 | 12.0 | 5.6 |
pfu_aug1.0_1306.1_22530.t1 | 4 | 3 | EF-hand_1 | 86 | 114 | 1.4e-24 | 83.4 | 4.3e-08 | 6.3e-05 | 21.9 |
pfu_aug1.0_1306.1_22530.t1 | 4 | 3 | EF-hand_6 | 86 | 115 | 7.7e-20 | 68.9 | 1.3e-08 | 2.0e-05 | 24.1 |
pfu_aug1.0_1306.1_22530.t1 | 2 | 2 | EF-hand_7 | 87 | 147 | 3.5e-21 | 75.0 | 1.7e-17 | 2.5e-14 | 53.1 |
pfu_aug1.0_1306.1_22530.t1 | 3 | 2 | EF-hand_5 | 87 | 102 | 1.5e-11 | 43.1 | 0.057 | 85.0 | 2.7 |
pfu_aug1.0_1306.1_22530.t1 | 2 | 2 | EF-hand_9 | 90 | 148 | 1.7e-14 | 53.4 | 2.6e-10 | 3.8e-07 | 29.9 |
pfu_aug1.0_1306.1_22530.t1 | 4 | 4 | EF-hand_8 | 99 | 148 | 2.1e-14 | 52.8 | 1.2e-14 | 1.8e-11 | 43.4 |
pfu_aug1.0_1306.1_22530.t1 | 4 | 4 | EF-hand_1 | 122 | 149 | 1.4e-24 | 83.4 | 5.2e-12 | 7.8e-09 | 34.2 |
pfu_aug1.0_1306.1_22530.t1 | 4 | 4 | EF-hand_6 | 131 | 148 | 7.7e-20 | 68.9 | 8.3e-06 | 0.012 | 15.3 |
pfu_aug1.0_1306.1_22530.t1 | 3 | 3 | EF-hand_5 | 131 | 147 | 1.5e-11 | 43.1 | 3.3e-07 | 0.00049 | 19.3 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_1306.1_22530.t1 | gi|25453302|sp|Q9BLG0.3|TNNC_TODPA | Troponin C [Todarodes pacificus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
adductorMuscle | 1 |
mantle | 1 |
Transcript
Transcript ID | pfu_aug1.0_1306.1_22530.t1 |
---|---|
Definition | - |
>pfu_aug1.0_1306.1_22530.t1 atgtcggaatttaaagtatcggaaaaacaatttgcagatgcccatcagacgtttaacctgtttgacaagaagggtacagg ccaagtgtccactaaagagttagaaaaagtttttaaaagtttagcacttcaagttgacgatgagaaactcaaagaatgga gtgacgagcttgatgaagaggctaccggatatttcacatgggatcaatttaagatcctttttgagaggaagttgaaaacg gacgaagatgagagagaattacgggaagcattcagagtgttagacaagggaaataaaggcacaattccagtagaggactt aaggtggattttaaaatcgttaggtgatgatttaacagacgaagaactcgatgaaatgatagcggagacagacacagacg gctcagggacagtagattatgaagaattcaaaacgctgatgacgtcagactga |
Protein
Protein ID | pfu_aug1.0_1306.1_22530.t1 |
---|---|
Definition | - |
>pfu_aug1.0_1306.1_22530.t1 MSEFKVSEKQFADAHQTFNLFDKKGTGQVSTKELEKVFKSLALQVDDEKLKEWSDELDEEATGYFTWDQFKILFERKLKT DEDERELREAFRVLDKGNKGTIPVEDLRWILKSLGDDLTDEELDEMIAETDTDGSGTVDYEEFKTLMTSD |