Gene
Gene Model ID | pfu_aug1.0_13100.1_39443 |
---|---|
Locus | scaffold13100.1 : 32396 ... 38346 : + |
To GenomeBrowser | scaffold13100.1:32396..38346 |
Genes list of scaffold | scaffold13100.1 |
Synonym | pfu_aug2.0_2819.1_32317 |
Manual annotation
Study field | other developmental genes |
---|---|
Gene name | Msx |
Description | High BLAST hits to various organisms' MSX. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_13100.1_39443.t1 | 1 | 1 | Homeobox | 183 | 239 | 2.8e-22 | 78.0 | 6.4e-26 | 4.8e-22 | 77.3 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_13100.1_39443.t1 | gi|158936908|dbj|BAF91569.1| | Msx protein [Corbicula fluminea] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
trochophore | 1 |
>Adult tissues | |
mantlePallium | 1 |
Transcript
Transcript ID | pfu_aug1.0_13100.1_39443.t1 |
---|---|
Definition | - |
>pfu_aug1.0_13100.1_39443.t1 atgcacccggtagctctaacagcgagttctaactctgcatttagcaaactgagtccgtcacacgtgagtacggaaaatgt aaacaatgaaaattctcaagaaaaaacgaccaacaattcaacgttatccggatccaagtctttgtcaccgactccgaaac aggttttgaaatttagtgttgattctatgttatcagaaaagtgctcatcgaaagaggaaaaagacagagaaagttcgaac tctccaaattcggttagttcagacgacagttttcatggatctccaaagacaatttctgctactatgggatcattcagtat ggacggtatacttagtaagcatcacacaaacagtagaactacagacttacaaagttctgtgacacctcctataatgtcac atgtaggaggggagagatggaacggtttttatgctgccacctcatttccatggctgtccaactcctctctaactccccca aaagcaccaccaagtcctcccaggataaatccccagaaatgtacattacggaaacacaaaacgaatcgtaaaccacggac gccattcacaacgtcacaactcttggcgttagaacgaaaattccgtcagaagcagtatctatctatagcggagcgtgcag aattttccgcttcattgaatcttacagagactcaagtcaagatttggtttcaaaatcggagagcaaaggcaaaacgctta catgaagcagaactggaaaaactaaaaatggcggcaaaaccgatgttaccacctgcgatcggtgtgacttttcccgccgc tgctgcattgtactcgggatcatacggaaggcctcatggttttcccagttctctaatatcaccattcagttatgccctga cgccgagttccgtaggtatgacgtatcaccattag |
Protein
Protein ID | pfu_aug1.0_13100.1_39443.t1 |
---|---|
Definition | - |
>pfu_aug1.0_13100.1_39443.t1 MHPVALTASSNSAFSKLSPSHVSTENVNNENSQEKTTNNSTLSGSKSLSPTPKQVLKFSVDSMLSEKCSSKEEKDRESSN SPNSVSSDDSFHGSPKTISATMGSFSMDGILSKHHTNSRTTDLQSSVTPPIMSHVGGERWNGFYAATSFPWLSNSSLTPP KAPPSPPRINPQKCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSASLNLTETQVKIWFQNRRAKAKRL HEAELEKLKMAAKPMLPPAIGVTFPAAAALYSGSYGRPHGFPSSLISPFSYALTPSSVGMTYHH |