Gene
Gene Model ID | pfu_aug1.0_1374.1_58471 |
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Locus | scaffold1374.1 : 14626 ... 24876 : + |
To GenomeBrowser | scaffold1374.1:14626..24876 |
Genes list of scaffold | scaffold1374.1 |
Synonym | NA |
Manual annotation
Study field | other developmental genes |
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Gene name | Tbx2/3 |
Description | BLAST hits to Tbx2 and Tbx3.Simple NJ tree shows an affinity to HsTbx2 and HsTbx3. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_1374.1_58471.t1 | 1 | 1 | T-box | 78 | 198 | 0.0 | 180.9 | 0.0 | 0.0 | 180.1 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_1374.1_58471.t1 | gi|115668687|ref|XP_797010.2| | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
8-16cell | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
Transcript
Transcript ID | pfu_aug1.0_1374.1_58471.t1 |
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Definition | - |
>pfu_aug1.0_1374.1_58471.t1 atgtacgaggacgacttgatatcacagaggcaccgggccttccccctcagccacgggctgatgcataccccacaggcttt ttcttttggattccctgttcacccagctcatgacccgatgggtctatcaagccagagtcagcagtttgggggatacccgc cactcccctcccattccgaccataagaggatgctgggacccccacagggagactcaatggataagaacattaagatcagt ctggagaacagagacctgtggagcaaattccataatatcgggaccgagatgatcatcacaaagaccggaagacgcatgtt cccaaccctaaaggtcaacttggaaggccttgatccacattctaaatatatcctcctggttgacatcgtacccgtggacg actgtagatacaagtaccataactccgaatgggtcgtgacaggaaaagcggaacctcacatgccgggtagactctacatt cacccagactcaccagcttccggttcgcattggatgaaacagccgctaacttttcacaaactcaaactcaccaacaacaa cttggatcaaaacggacacagtgtttcaaaatcctttttcttcgtggtcttccattatattgatagaaatggaattattg aatttgaatttctagatcaccgactaagcatgaaaagaccagcaagcgacgacggattgacagatctcggaaaagacaat tcatactcaaagaagatcaaactagaggagaatgaagtcgatcgaccatcagctattgtgcaacagagagtaaaatccga cgaggaaacggatcagaacgtgtccagtaattcagaagaatctcactcggacggacaagaacccgacttgtctccttgcc agttgaagacatcacccgccatgcccagtgggagctccctgaataaggcgcccagcccggtggatcatcatgcgcccact ctacagtccagtcattgtcagtatatgggcgccgggagtaagccattctcccagtcgtgtatgggaaccagcgaccaaat ttactatcctcaccattctcccgtcaacaggacatctcccgggagctcatttctcccggtctcctctacctcgggtctcc ttccctcttcatccagtctcagccttcacagtatgaaccagatgcaggcatgccgactctcacaaccaagcagcgactgc gctctgagacaatcatccgggcacctgtcatcttcaagtcacagcgcttatggcggactacggggaacgcctcctccttc tcagcacccttcactgccatcctgtacgtacatgcagccgacacagccctacacgtctcatttggcgccaaacgtgcaca tgatgaacatgaattttcccggaccaatggcatga |
Protein
Protein ID | pfu_aug1.0_1374.1_58471.t1 |
---|---|
Definition | - |
>pfu_aug1.0_1374.1_58471.t1 MYEDDLISQRHRAFPLSHGLMHTPQAFSFGFPVHPAHDPMGLSSQSQQFGGYPPLPSHSDHKRMLGPPQGDSMDKNIKIS LENRDLWSKFHNIGTEMIITKTGRRMFPTLKVNLEGLDPHSKYILLVDIVPVDDCRYKYHNSEWVVTGKAEPHMPGRLYI HPDSPASGSHWMKQPLTFHKLKLTNNNLDQNGHSVSKSFFFVVFHYIDRNGIIEFEFLDHRLSMKRPASDDGLTDLGKDN SYSKKIKLEENEVDRPSAIVQQRVKSDEETDQNVSSNSEESHSDGQEPDLSPCQLKTSPAMPSGSSLNKAPSPVDHHAPT LQSSHCQYMGAGSKPFSQSCMGTSDQIYYPHHSPVNRTSPGSSFLPVSSTSGLLPSSSSLSLHSMNQMQACRLSQPSSDC ALRQSSGHLSSSSHSAYGGLRGTPPPSQHPSLPSCTYMQPTQPYTSHLAPNVHMMNMNFPGPMA |