Gene
Gene Model ID | pfu_aug1.0_146933.1_35560 |
---|---|
Locus | scaffold146933.1 : 1 ... 974 : + |
To GenomeBrowser | scaffold146933.1:1..974 |
Genes list of scaffold | scaffold146933.1 |
Synonym | NA |
Manual annotation
Study field | structural proteins |
---|---|
Gene name | titin |
Description | Titin partial sequence. BLASTP hit to GL450640(Harpegnathos saltator). |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_146933.1_35560.t1 | 2 | 1 | I-set | 5 | 59 | 3.1e-30 | 103.8 | 4.0e-12 | 6.6e-09 | 35.5 |
pfu_aug1.0_146933.1_35560.t1 | 2 | 1 | Ig_2 | 5 | 54 | 2.8e-10 | 40.1 | 0.00031 | 0.52 | 10.4 |
pfu_aug1.0_146933.1_35560.t1 | 2 | 1 | V-set | 11 | 47 | 2.3e-07 | 30.7 | 2.3e-06 | 0.0038 | 17.1 |
pfu_aug1.0_146933.1_35560.t1 | 2 | 1 | ig | 17 | 40 | 1.0e-05 | 25.5 | 0.012 | 20.0 | 5.3 |
pfu_aug1.0_146933.1_35560.t1 | 2 | 2 | I-set | 75 | 155 | 3.1e-30 | 103.8 | 7.5e-22 | 1.2e-18 | 66.6 |
pfu_aug1.0_146933.1_35560.t1 | 2 | 2 | V-set | 75 | 143 | 2.3e-07 | 30.7 | 0.00019 | 0.31 | 10.9 |
pfu_aug1.0_146933.1_35560.t1 | 2 | 2 | Ig_2 | 89 | 154 | 2.8e-10 | 40.1 | 1.4e-09 | 2.3e-06 | 27.6 |
pfu_aug1.0_146933.1_35560.t1 | 2 | 2 | ig | 89 | 136 | 1.0e-05 | 25.5 | 1.4e-06 | 0.0023 | 18.0 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_146933.1_35560.t1 | gi|115681464|ref|XP_794723.2| | 2.0e-32 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues |
Transcript
Transcript ID | pfu_aug1.0_146933.1_35560.t1 |
---|---|
Definition | - |
>pfu_aug1.0_146933.1_35560.t1 tcttacacaggagtaaagacagtcgcaaaattgatgaaagtaagaaatatcaaatgatgcaagatgacatgactgtttcc atgacgatacgtgaggtcacccaaaaagatgctggaagttacagtgtggaggcatcaaatgaccttggatctgtgtcaac atcaggtcaactagaaatacaaatgaaaccagaactggactttgacaacaaattccgtgaccttattgtactacagagtg gtcagtctctgagggttccagtgatcgtgtcaggactgcccaaaccagacgtcacatggaggaaagacgatactccactc aaatcctccggtaaactaagcatagaaactacagagagaggaaccactatacacgtcaagaaagtggccagaagtgatga tgggttataccacctgacagctcagaatgaggctggagaggccactgctaacttcgatgtagaagtcatagacgtaccat caccaccagagggtcccgtggaatattcagaaattaatcgggacagtgttacgttgtcatggaaaccacccgttgatgat ggtggatccaaacttttatcgtacattattgagaaacgtgaag |
Protein
Protein ID | pfu_aug1.0_146933.1_35560.t1 |
---|---|
Definition | - |
>pfu_aug1.0_146933.1_35560.t1 LHRSKDSRKIDESKKYQMMQDDMTVSMTIREVTQKDAGSYSVEASNDLGSVSTSGQLEIQMKPELDFDNKFRDLIVLQSG QSLRVPVIVSGLPKPDVTWRKDDTPLKSSGKLSIETTERGTTIHVKKVARSDDGLYHLTAQNEAGEATANFDVEVIDVPS PPEGPVEYSEINRDSVTLSWKPPVDDGGSKLLSYIIEKRE |