Gene
Gene Model ID | pfu_aug1.0_1605.1_15546 |
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Locus | scaffold1605.1 : 28216 ... 35894 : + |
To GenomeBrowser | scaffold1605.1:28216..35894 |
Genes list of scaffold | scaffold1605.1 |
Synonym | pfu_aug2.0_78.1_26811 |
Manual annotation
Study field | other developmental genes |
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Gene name | retinal homeobox |
Description | It is the best hit to XM_001379867.1 PREDICTED: Monodelphis domestica paired box protein Pax-7-like (LOC100030378), partial mRNA |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_1605.1_15546.t1 | 1 | 1 | Homeobox | 54 | 110 | 7.7e-24 | 83.0 | 3.8e-27 | 1.4e-23 | 82.2 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_1605.1_15546.t1 | gi|126343736|ref|XP_001379904.1| | PREDICTED: paired box protein Pax-7-like, partial [Monodelphis domestica] | 2.0e-40 |
Transcript
Transcript ID | pfu_aug1.0_1605.1_15546.t1 |
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Definition | - |
>pfu_aug1.0_1605.1_15546.t1 atgcgacaagatatcacgctgttaagcgcgctacgcgtgaaattgcttcattcgccaaatgataaaattgtggcttgcac aatacacgagaagaatattaatccgcgcatcgaatccgactgtgagtcagaacctggtctatcggtgaaaagaaaacaga ggagaagtcggactactttcaccgcggagcaattagaagaactagagcgagcctttgaacgtacccattacccggatata tatacgcgagaggaattagcacagagaacaaagctcactgaggctcgggtgcaggtgtggttcagtaatagacgagcaag atggcggaaacagatgggaagcaatcagctcacggctctgaacagcattctacaggttccccaaggtatgggagcgccac cttatatgatccatgacccaagctatacgctgcctcataacacagacaacatttggcacagatcgtccatggcccagtcg tttccgtcattcggtcagtcactgaaaccctctgacaattcatacgccggtattatggagaattacctgtctcatacatc acagattcacggtcttccttcccatacgtcatctgagtccttatcctctacctggtccacgccgtccaccacttccgttc ctgcgctgggatatgcgccatctagtggtcattaccatcattattctgacgtagccaaatcatccctacattcttataat cctcatataccatcagttgcagtcgccaacatggaccgatgctccgtcgatgacagcctggttgcattacgtatgaagtc acgtgaacattcagccgctctaagcctcatgcaggttgccgacacaaacaaaatggcggcaacctcgttttga |
Protein
Protein ID | pfu_aug1.0_1605.1_15546.t1 |
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Definition | - |
>pfu_aug1.0_1605.1_15546.t1 MRQDITLLSALRVKLLHSPNDKIVACTIHEKNINPRIESDCESEPGLSVKRKQRRSRTTFTAEQLEELERAFERTHYPDI YTREELAQRTKLTEARVQVWFSNRRARWRKQMGSNQLTALNSILQVPQGMGAPPYMIHDPSYTLPHNTDNIWHRSSMAQS FPSFGQSLKPSDNSYAGIMENYLSHTSQIHGLPSHTSSESLSSTWSTPSTTSVPALGYAPSSGHYHHYSDVAKSSLHSYN PHIPSVAVANMDRCSVDDSLVALRMKSREHSAALSLMQVADTNKMAATSF |