Gene
Gene Model ID | pfu_aug1.0_166749.1_28497 |
---|---|
Locus | scaffold166749.1 : 1 ... 873 : + |
To GenomeBrowser | scaffold166749.1:1..873 |
Genes list of scaffold | scaffold166749.1 |
Synonym | pfu_aug2.0_4573.1_12676 |
Manual annotation
Study field | Biomineralization |
---|---|
Gene name | 000493 |
Description | calcium binding |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_166749.1_28497.t1 | 1 | 1 | EF-hand_7 | 18 | 65 | 1.3e-07 | 31.6 | 1.1e-10 | 2.0e-07 | 31.0 |
pfu_aug1.0_166749.1_28497.t1 | 2 | 1 | EF-hand_1 | 19 | 37 | 3.2e-07 | 29.1 | 0.019 | 35.0 | 4.0 |
pfu_aug1.0_166749.1_28497.t1 | 2 | 1 | EF-hand_6 | 19 | 37 | 2.7e-06 | 26.8 | 0.0023 | 4.3 | 7.4 |
pfu_aug1.0_166749.1_28497.t1 | 2 | 1 | EF-hand_5 | 20 | 34 | 2.2e-06 | 26.7 | 0.075 | 140.0 | 2.0 |
pfu_aug1.0_166749.1_28497.t1 | 1 | 1 | EF-hand_8 | 24 | 64 | 3.4e-07 | 29.7 | 3.0e-10 | 5.6e-07 | 29.0 |
pfu_aug1.0_166749.1_28497.t1 | 2 | 2 | EF-hand_1 | 44 | 67 | 3.2e-07 | 29.1 | 1.2e-08 | 2.2e-05 | 23.4 |
pfu_aug1.0_166749.1_28497.t1 | 2 | 2 | EF-hand_5 | 45 | 62 | 2.2e-06 | 26.7 | 2.2e-08 | 4.0e-05 | 22.7 |
pfu_aug1.0_166749.1_28497.t1 | 2 | 2 | EF-hand_6 | 45 | 65 | 2.7e-06 | 26.8 | 8.9e-07 | 0.0016 | 18.1 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_166749.1_28497.t1 | gi|73427354|gb|AAZ76260.1| | mantle gene 6 [Pinctada fucata] | 6.0e-20 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues | |
adductorMuscle | 1 |
mantle | 1 |
mantleEdge | 1 |
mantlePallium | 1 |
pearlSac | 1 |
Transcript
Transcript ID | pfu_aug1.0_166749.1_28497.t1 |
---|---|
Definition | - |
>pfu_aug1.0_166749.1_28497.t1 aaaaaagggaaattcaacatcgatttaatgttggatccctgtgaacttatgtcatacgataacaacattgacggattggt tacacatgaggatatcaaaaagatattcaacaacgcggagttggccgaagtgctcttcaaagaggcagatcaaaacgatg atggccagatttcggcaagtgaatttgttgtcatcacaagaagcattaacggatgtcaagaggaagtgtaa |
Protein
Protein ID | pfu_aug1.0_166749.1_28497.t1 |
---|---|
Definition | - |
>pfu_aug1.0_166749.1_28497.t1 KKGKFNIDLMLDPCELMSYDNNIDGLVTHEDIKKIFNNAELAEVLFKEADQNDDGQISASEFVVITRSINGCQEEV |