Gene
Gene Model ID | pfu_aug1.0_16692.1_03744 |
---|---|
Locus | scaffold16692.1 : 816 ... 10423 : + |
To GenomeBrowser | scaffold16692.1:816..10423 |
Genes list of scaffold | scaffold16692.1 |
Synonym | pfu_aug2.0_1914.1_15309 |
Manual annotation
Study field | Environmental Response |
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Gene name | vertebrate ancient opsin |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_16692.1_03744.t1 | 1 | 1 | 7tm_1 | 27 | 110 | 5.5e-10 | 38.8 | 8.8e-14 | 6.5e-10 | 38.5 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_16692.1_03744.t1 | gi|260828153|ref|XP_002609028.1| | hypothetical protein BRAFLDRAFT_84844 [Branchiostoma floridae] | 8.0e-17 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues |
Transcript
Transcript ID | pfu_aug1.0_16692.1_03744.t1 |
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Definition | - |
>pfu_aug1.0_16692.1_03744.t1 atgctcaactttcgcgtcttgccgcgtctcccacaagttttcatcactgccggaacacggattatcatatcgaacatcaa gtgggtgctgattgcaatatgggcatattctttgatatggaccggacctcccttgattggctggagcaaatatacattgg agaagtatggtacctcctgtacgatcaactggtatggccgggaaatcggggacttgtcttataacacagttatcacattt acttgcttcgtggtccatgccaccattttcatcttctgctactctaacatcatcagacaatacaaagttgcagacaacct gaaggaccgcacagtgacggcagatgatgacaacgagaactccatgaacatagaggatgttgtctggtaccacaaagtca ccacatccagaagtattactttgacttcccttggaatgatatcggcnatataccttagcatggactccctacgccatcat cagtatatgggtgatgtatatatccgatgtcccagtgtggattcacgttctacctacgatgatgggaaagtcagcgtgtc tggtcaatcctatcgtttatggtatttgtag |
Protein
Protein ID | pfu_aug1.0_16692.1_03744.t1 |
---|---|
Definition | - |
>pfu_aug1.0_16692.1_03744.t1 MLNFRVLPRLPQVFITAGTRIIISNIKWVLIAIWAYSLIWTGPPLIGWSKYTLEKYGTSCTINWYGREIGDLSYNTVITF TCFVVHATIFIFCYSNIIRQYKVADNLKDRTVTADDDNENSMNIEDVVWYHKVTTSRSITLTSLGMISXIYLSMDSLRHH QYMGDVYIRCPSVDSRSTYDDGKVSVSGQSYRLWYL |