Gene
Gene Model ID | pfu_aug1.0_1723.1_37096 |
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Locus | scaffold1723.1 : 31863 ... 33815 : - |
To GenomeBrowser | scaffold1723.1:31863..33815 |
Genes list of scaffold | scaffold1723.1 |
Synonym | pfu_aug2.0_4636.1_22585 |
Manual annotation
Study field | structural proteins |
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Gene name | actin |
Description | Actin partial sequence. BLASTP top hit to GU645236(Penaeus japonicus). The amino acid sequence lacks the N-terminal region of 82 amino acids compared with ohter actin sequences. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_1723.1_37096.t1 | 1 | 1 | Actin | 1 | 294 | 0.0 | 389.0 | 0.0 | 0.0 | 388.8 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_1723.1_37096.t1 | gi|295849220|gb|ADG45298.1| | actin [Marsupenaeus japonicus] | 0.0 |
Transcript
Transcript ID | pfu_aug1.0_1723.1_37096.t1 |
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Definition | - |
>pfu_aug1.0_1723.1_37096.t1 atggaggctatctggtttcataccttctacaatgaactacatgtagcccccgaggaacaccctattctcctgactgagac tccattcaaccgaaagtttgacagagaaaagatgacagagatcatatttgaaaccttcaactgtcctgccatgtacgtag ctatccaacccgtgatgtcactgcacgcgtctggtctttctacaggtatcgtactggaatcaggggatggcgtatcacac acagtacccatctatgagggatattctcttccccacgccgtcaagagattagacttcgccggacgtgacctcacagatta tctctcaaggatccttatggagcgtggatactcattcacatccacatctgagagggaaatcgtcagagacattaaggaaa aattatgttatgttgccttggactttgaacaagaaatgactaaagccgcgtcatcatcatctgtagagaggagttacgaa cttcccgacggtcaggtcatcaccattggtaacgaaaggttcagggtacctgaggccatttttcagccatcttacctacc atcagaatcaagtggaattcatgagatcacgtgcgacagtatcatgagatgtgacgtagatattcgtaaagacttgtacg caaacattattttatctggcggttttaccatgtattcaggcatcgctgaccgtatgcagaaagaaatcacatctcttgct ccatcaacaatgaaaatcaatgtcatagctccaccagagaggaaatactcggtgtgggttggtgggtctatccttgcttc tctctccaccttccagcagatgtggatcagcaaagaggaatacggcaactacggtcaatccatcgtccataagaagtgct tctga |
Protein
Protein ID | pfu_aug1.0_1723.1_37096.t1 |
---|---|
Definition | - |
>pfu_aug1.0_1723.1_37096.t1 MEAIWFHTFYNELHVAPEEHPILLTETPFNRKFDREKMTEIIFETFNCPAMYVAIQPVMSLHASGLSTGIVLESGDGVSH TVPIYEGYSLPHAVKRLDFAGRDLTDYLSRILMERGYSFTSTSEREIVRDIKEKLCYVALDFEQEMTKAASSSSVERSYE LPDGQVITIGNERFRVPEAIFQPSYLPSESSGIHEITCDSIMRCDVDIRKDLYANIILSGGFTMYSGIADRMQKEITSLA PSTMKINVIAPPERKYSVWVGGSILASLSTFQQMWISKEEYGNYGQSIVHKKCF |