Gene
Gene Model ID | pfu_aug1.0_1846.1_58666 |
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Locus | scaffold1846.1 : 11140 ... 33355 : - |
To GenomeBrowser | scaffold1846.1:11140..33355 |
Genes list of scaffold | scaffold1846.1 |
Synonym | pfu_aug2.0_451.1_04186 |
Manual annotation
Study field | Transcription Factors |
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Gene name | Pfu-orphan-HLH-d |
Description | Best hit to BAA19936 BMAL1c [Homo sapiens] with 4e-11 by a BLASTP search against NCBI Homo sapiens nr database. The predicted protein contains one insignificant PAS domain. This annotation is based on NJ, ML, and BI. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_1846.1_58666.t1 | 2 | 1 | HLH | 10 | 55 | 5.4e-09 | 35.6 | 2.2e-12 | 5.4e-09 | 35.6 |
pfu_aug1.0_1846.1_58666.t1 | 2 | 2 | HLH | 163 | 170 | 5.4e-09 | 35.6 | 0.49 | 1200.0 | -0.8 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_1846.1_58666.t1 | gi|242020804|ref|XP_002430841.1| | hypoxia-inducible factor 1 alpha, putative [Pediculus humanus corporis] | 5.0e-13 |
Transcript
Transcript ID | pfu_aug1.0_1846.1_58666.t1 |
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Definition | - |
>pfu_aug1.0_1846.1_58666.t1 atgacaatatacgagaaattgcgcagggagggtgaaaagttgcgcagagaaaagttgaaccagaggattaaggaactggc agaggctgtgccctggttacctaagtctgaacaaaggccggaaaagacacgcattctgaaactggcagcgtcatatctca gatttcatcatggtctgaagaagaagatgttgatgaaggccctacctccatggctacaggatgagatttcccacttctct ttagaaaagcagattacagatggatttctgcttgtggtgtcgagaggtggaaacataatctacgtgtccgagacggtatc tgaggtgctcggccactcacaggaaactcactgtaactccatggaaactcgcctcaactcggagcacaatgtgacagaga tccctgaaaatatgcaggacaaaaagacatggcatgtgacaatggcacttcacaagcagctacgacagaaatttactgtg ctgcagcacaatatgcaggagcagcacagagaaatcaatgagttgcagcacaaactaacagagagcacaatgcatgtctc agagcacaatagcacagacagcactgatcgaaggtcacagatacttcaaaaaataaattctgttcagactgataaacaga tttacgcatttcaattgcgggaaaaaattgagaaatttcatgacgtcacagtgcaatttcaatgtttgtccgaggttcaa agcttgtttgtccgagaatttatgcattag |
Protein
Protein ID | pfu_aug1.0_1846.1_58666.t1 |
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Definition | - |
>pfu_aug1.0_1846.1_58666.t1 MTIYEKLRREGEKLRREKLNQRIKELAEAVPWLPKSEQRPEKTRILKLAASYLRFHHGLKKKMLMKALPPWLQDEISHFS LEKQITDGFLLVVSRGGNIIYVSETVSEVLGHSQETHCNSMETRLNSEHNVTEIPENMQDKKTWHVTMALHKQLRQKFTV LQHNMQEQHREINELQHKLTESTMHVSEHNSTDSTDRRSQILQKINSVQTDKQIYAFQLREKIEKFHDVTVQFQCLSEVQ SLFVREFMH |