Gene
Gene Model ID | pfu_aug1.0_1868.1_37159 |
---|---|
Locus | scaffold1868.1 : 71236 ... 76826 : + |
To GenomeBrowser | scaffold1868.1:71236..76826 |
Genes list of scaffold | scaffold1868.1 |
Synonym | pfu_aug2.0_2151.1_05428 |
Manual annotation
Study field | Transcription Factors |
---|---|
Gene name | Pfu-amber |
Description | Best hit to Adi-amber by a BLASTP search against Acropora digitifera protein database. This annotation is based on NJ, ML, and BI. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_1868.1_37159.t1 | 1 | 1 | HLH | 97 | 149 | 6.3e-17 | 61.0 | 2.0e-20 | 1.5e-16 | 59.8 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_1868.1_37159.t1 | gi|156370137|ref|XP_001628328.1| | predicted protein [Nematostella vectensis] | 2.0e-15 |
Transcript
Transcript ID | pfu_aug1.0_1868.1_37159.t1 |
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Definition | - |
>pfu_aug1.0_1868.1_37159.t1 atgcattgcaatcaggagaatataaaacattaccaaacgtacgaagacgacatgtgtctttcctttgaggacaggaatta cgttgaaagtgtggactttgagtatgagtatgactatgattacgatgggtatggcggaagtggtcaatatggacagaata ttcagccggagcatgtgccatcttacacgtgccaccaatacgcctactacgacggtcaatatcaggctgaccattcgcct gctgaaaagccacaatcaaaaaaactgaagcccgtgccggacatgatgcgagtttgcgccacagaaagggaaaggaaccg tatgcacatgttaaacgacgcattcgacgagttgcgcaaagtggttcctaaacagaatctaagtgaccatcagaaattat caaaaatagccacgctaaggcttgccatccattacatagcagcattggtcagtacgctgaggaacagtggggttgagatc agagtggtggagagcaagggcatcacggacaggcgaggaaagcgcagaggagcaaagaaaaggaaaaccaataaatcttg a |
Protein
Protein ID | pfu_aug1.0_1868.1_37159.t1 |
---|---|
Definition | - |
>pfu_aug1.0_1868.1_37159.t1 MHCNQENIKHYQTYEDDMCLSFEDRNYVESVDFEYEYDYDYDGYGGSGQYGQNIQPEHVPSYTCHQYAYYDGQYQADHSP AEKPQSKKLKPVPDMMRVCATERERNRMHMLNDAFDELRKVVPKQNLSDHQKLSKIATLRLAIHYIAALVSTLRNSGVEI RVVESKGITDRRGKRRGAKKRKTNKS |