Gene
Gene Model ID | pfu_aug1.0_19560.1_18644 |
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Locus | scaffold19560.1 : 4876 ... 17484 : + |
To GenomeBrowser | scaffold19560.1:4876..17484 |
Genes list of scaffold | scaffold19560.1 |
Synonym | pfu_aug2.0_608.1_27585 |
Manual annotation
Study field | Environmental Response |
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Gene name | 7tm_1 like |
Description | Partially similar to Protein NPR-20 (CAA90404.4 [Caenorhabditis elegans] 48.5 48.5 44% 0.001 26%)7tm_1 62 178 5.2e-07 28.9 1.0e-10 7.0e-07 28.5 |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_19560.1_18644.t1 | 1 | 1 | 7tm_1 | 62 | 178 | 5.7e-07 | 28.9 | 1.0e-10 | 7.8e-07 | 28.4 |
Transcript
Transcript ID | pfu_aug1.0_19560.1_18644.t1 |
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Definition | - |
>pfu_aug1.0_19560.1_18644.t1 atgttattaccagaggagtccgaccgacattcagagaggacaggtggtcgggaccctgtcttctctaaagaggtttggac agggcccgtcatggagtcccgtcgtcagtcggtcagagtgaaagtcttaaggatgcgctggtacaaggctgctgattggt ccagtaccatgtcgagatgtaccggaaatttcattacaattgtcttcattattcgaaggaaaatgtttgaaaaagtgacg tacttggccatttgcttattagcattttcggatatgaccgccgttctattacgaggaggatacttactttacttaaagga tgcatcatcttatgaactcgcaggattatttttaagcgcaacttttgtgacaatctgtacatcaaatggacatataatta ttctggccaggttacgatacgagcttgtggtcaatcctctgctaaacctgacctacacatcacgtcatattctgaaacag agcttcttagtgtggacaatttccattatgcttggagttccttactggttgaccttccatataccagaatcagtgcaact atatgagtacatttccattaatgatgtctttgtttcgtttcctctgtttcaaagaaataatgatgatgttactatcgaca atcctgtttttgaaaagtataaagattttatttatccacatgaatcgattcgaaacaaggcaaacgctactaacacagaa caaccgtttttggacctaaatatcaaaattgttaatggagagattcatacaagtatgtataacaaaagagatgattttgg atttagcatagtaaatttcccctggcttgacggtgatgttcctagattaccgtcctattgtatctacatttcacagatca tccggtatgctagagggtttttcgatgttttgcagatggtacttcagtag |
Protein
Protein ID | pfu_aug1.0_19560.1_18644.t1 |
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Definition | - |
>pfu_aug1.0_19560.1_18644.t1 MLLPEESDRHSERTGGRDPVFSKEVWTGPVMESRRQSVRVKVLRMRWYKAADWSSTMSRCTGNFITIVFIIRRKMFEKVT YLAICLLAFSDMTAVLLRGGYLLYLKDASSYELAGLFLSATFVTICTSNGHIIILARLRYELVVNPLLNLTYTSRHILKQ SFLVWTISIMLGVPYWLTFHIPESVQLYEYISINDVFVSFPLFQRNNDDVTIDNPVFEKYKDFIYPHESIRNKANATNTE QPFLDLNIKIVNGEIHTSMYNKRDDFGFSIVNFPWLDGDVPRLPSYCIYISQIIRYARGFFDVLQMVLQ |