Gene
Gene Model ID | pfu_aug1.0_19663.1_61932 |
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Locus | scaffold19663.1 : 9576 ... 10758 : + |
To GenomeBrowser | scaffold19663.1:9576..10758 |
Genes list of scaffold | scaffold19663.1 |
Synonym | pfu_aug2.0_8.1_26632 |
Manual annotation
Study field | other developmental genes |
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Gene name | Pax-2/5/8 |
Description | BLAST best hits to NCBI XM_001363515.2 and simple NJ tree also showed an affinity to pax2/5/8. (human) |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_19663.1_61932.t1 | 1 | 1 | PAX | 1 | 118 | 0.0 | 160.5 | 0.0 | 0.0 | 160.5 |
pfu_aug1.0_19663.1_61932.t1 | 1 | 1 | HTH_23 | 15 | 54 | 2.3e-06 | 27.0 | 3.3e-09 | 6.2e-06 | 25.6 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_19663.1_61932.t1 | gi|301612842|ref|XP_002935920.1| | PREDICTED: paired box protein Pax-5 isoform X4 [Xenopus (Silurana) tropicalis] | 3.9937e-43 |
Transcript
Transcript ID | pfu_aug1.0_19663.1_61932.t1 |
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Definition | - |
>pfu_aug1.0_19663.1_61932.t1 atgggtggcacatacataaatggaaaggctctgccagattttatgcgtcaaaggatcataattctatctaaccaaggact caaagcagcagagatttcccgccaattacgggtgtcacatggctgcgtttcaaagctcctccgacgatacaagctcactg gttccattaaagccaagagccaaggaggatccaaacctaccgtggccattccatcagtagttgagactatccatagatac aaggaagaaaatccaacaatcttcgcttgggaaataagagaaaaactgctgttagaccgtgtgtgtaacatcgataacgt accaagtataagctccatcaataggatagtcagaatggaatcttcaagaccaaacaggaggtcgtctttagaagatacat ctatctcgtcgcctgaatctgtaagtcctaccacggaaacaaagaaatcacccacttccttcagtattcgtgatattctg ggggacacgatcgataacgacgaaaaatgccgagcagaatccgtgaaacgaaggctagaagatccaactgatgataacag aaaattcaaaatttccaaaactgatcaaagaacatttgcaaataccagagaagaatgcagagaagacagatatagactta atgactctaagccgattacctattcgcaagatcataacattgcagcaaatcattacttaggactttactctcaatcgttg atgttcccctcatacacgtatccctatttaccgctgacgtcggcgtataactacggtaccggactcccgtcatcatacgc cgtgtctgccctccctgcgtggactccagcattatctacacactatctgacactaggactcggcgaaagtggcaagctga cctcaacgtaccaaaatgacgaacaaagcgatgatatgtacattccttacaaatctgagaacatggtcaagaaggaatta tttccatag |
Protein
Protein ID | pfu_aug1.0_19663.1_61932.t1 |
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Definition | - |
>pfu_aug1.0_19663.1_61932.t1 MGGTYINGKALPDFMRQRIIILSNQGLKAAEISRQLRVSHGCVSKLLRRYKLTGSIKAKSQGGSKPTVAIPSVVETIHRY KEENPTIFAWEIREKLLLDRVCNIDNVPSISSINRIVRMESSRPNRRSSLEDTSISSPESVSPTTETKKSPTSFSIRDIL GDTIDNDEKCRAESVKRRLEDPTDDNRKFKISKTDQRTFANTREECREDRYRLNDSKPITYSQDHNIAANHYLGLYSQSL MFPSYTYPYLPLTSAYNYGTGLPSSYAVSALPAWTPALSTHYLTLGLGESGKLTSTYQNDEQSDDMYIPYKSENMVKKEL FP |