Gene
Gene Model ID | pfu_aug1.0_1970.1_66167 |
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Locus | scaffold1970.1 : 60076 ... 74798 : + |
To GenomeBrowser | scaffold1970.1:60076..74798 |
Genes list of scaffold | scaffold1970.1 |
Synonym | pfu_aug2.0_137.1_23552 |
Manual annotation
Study field | Biomineralization |
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Gene name | catalase |
Description | reciprocal BLASTP best hit to NCBI Accession HQ703465.1 |
mRNA evidence |
Study field | Biomineralization |
---|---|
Gene name | catalase |
Description | reciplocal BLASTP best hit to NCBI Accession HQ703465 |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_1970.1_66167.t1 | 1 | 1 | Catalase | 25 | 409 | 0.0 | 624.6 | 0.0 | 0.0 | 624.3 |
pfu_aug1.0_1970.1_66167.t1 | 2 | 1 | Catalase-rel | 54 | 71 | 1.9e-20 | 72.5 | 0.47 | 3500.0 | -2.1 |
pfu_aug1.0_1970.1_66167.t1 | 2 | 2 | Catalase-rel | 428 | 493 | 1.9e-20 | 72.5 | 1.1e-23 | 7.9e-20 | 70.4 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_1970.1_66167.t1 | gi|320090050|gb|ADW08700.1| | catalase [Pinctada fucata] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
Transcript
Transcript ID | pfu_aug1.0_1970.1_66167.t1 |
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Definition | - |
>pfu_aug1.0_1970.1_66167.t1 atggctgggagagacaaagcaacaaaccaactcaatgagttccagaaaacacaaacgaaggcagatgtgttgaccaccgg tacaggtgcccctgttggcaccaagacggccacattaacggtcggtcccaggggtccggtcttgctacaggactttgttt tcactgatgaaatggcccactttaacagagaaagaattccagagagagtggtgcatgcaaaaggagcaggtgcatttgga tactttgagtgtacacatgacatcacaaagtattgtaaggctaaaccctttgagtttgtgggtaagaagacaccccttgg agttagattctcaactgttggtggagagagtggatctgcagacacggcccgtgacccccgaggatttgccgttaagatgt acacagaggatggaaactgggatctggttggaaacaacacacccatcttctttatcagagaccctatgttgtttccaagt tttattcatacacagaagagaaatccccagacacatttaaaggacccagacatgttttgggatttcatctcgctgagacc agagaccactcaccaggtgtctttcctgttctccgatcgtggtacccctgacggctacagacacatgaacggctacggaa gccacacatttaaaatggtcaacaatcaaggagaggcgttttactgtaaatttcattggaaagttgaccaaggaattaag aatttgatggctgacaaagcggctcagctggctacagatgacccagattatgccattcgtgacctttataacgccatcag cgagggtaacttccccacatggacactcaaagtccaagtcatgtcattccaggaggcggaaaaattccggtacaatccat ttgatctgacaaagatttggccacaaggggagttcccattgattccagtaggtaggatggttttgaacaggaatcctaag aactactttgctgaggtggagcaaatcgccttctcacctgtacatatgatccctgggatagaggccagccctgataaaat gttacagggtcgtttattttcctattctgacacacatcgacacagacttggcagtaactaccttcagattcctgttaact gtccatttaattcccgtgtaaagaactaccagagggacggcccacagtgtgttgatgaaaaccaaggtggtgcacctaac tacttccctaacagttttgtcggaccccaggacaacaccaatcatatggagagtgccttcacattgaccggagacgtcaa acgatacaatacggccgatgatgataattattcccaagtctccgtcttcttcagaaaagtacttaagccagaggaaagaa ggaggctgattgagaacattgcaggtcacctggtcaatgcctcagaattcatccaaaaaagaacggtcagcaacttcagt caggtggatccagaatacggcggtggaattcagaagcttatggataaaatgaaggcagagaggagagctaaacagacggg agtgacagccagtttatag |
Protein
Protein ID | pfu_aug1.0_1970.1_66167.t1 |
---|---|
Definition | - |
>pfu_aug1.0_1970.1_66167.t1 MAGRDKATNQLNEFQKTQTKADVLTTGTGAPVGTKTATLTVGPRGPVLLQDFVFTDEMAHFNRERIPERVVHAKGAGAFG YFECTHDITKYCKAKPFEFVGKKTPLGVRFSTVGGESGSADTARDPRGFAVKMYTEDGNWDLVGNNTPIFFIRDPMLFPS FIHTQKRNPQTHLKDPDMFWDFISLRPETTHQVSFLFSDRGTPDGYRHMNGYGSHTFKMVNNQGEAFYCKFHWKVDQGIK NLMADKAAQLATDDPDYAIRDLYNAISEGNFPTWTLKVQVMSFQEAEKFRYNPFDLTKIWPQGEFPLIPVGRMVLNRNPK NYFAEVEQIAFSPVHMIPGIEASPDKMLQGRLFSYSDTHRHRLGSNYLQIPVNCPFNSRVKNYQRDGPQCVDENQGGAPN YFPNSFVGPQDNTNHMESAFTLTGDVKRYNTADDDNYSQVSVFFRKVLKPEERRRLIENIAGHLVNASEFIQKRTVSNFS QVDPEYGGGIQKLMDKMKAERRAKQTGVTASL |