Gene
Gene Model ID | pfu_aug1.0_2007.1_29946 |
---|---|
Locus | scaffold2007.1 : 22314 ... 31145 : - |
To GenomeBrowser | scaffold2007.1:22314..31145 |
Genes list of scaffold | scaffold2007.1 |
Synonym | pfu_aug2.0_56.1_20123 |
Manual annotation
Study field | other |
---|---|
Gene name | NF-kappa B |
Description | BLASTP best hit to NCBI Accession ABL63469 |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_2007.1_29946.t1 | 1 | 1 | RHD | 87 | 253 | 0.0 | 241.4 | 0.0 | 0.0 | 240.4 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_2007.1_29946.t1 | gi|119351135|gb|ABL63469.1| | NF-kappa B [Pinctada fucata] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 2 |
trochophore | 1 |
>Adult tissues | |
adductorMuscle | 1 |
maleGonad | 1 |
mantle | 2 |
Transcript
Transcript ID | pfu_aug1.0_2007.1_29946.t1 |
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Definition | - |
>pfu_aug1.0_2007.1_29946.t1 atggcaaatttaagtagtgcagacttgcagcgtttcatcctaggagatactgatgacactattatccagcaattagattt cactggacccacggataatgagtactcctatgtacagaatttaatagcccactcccagcctgcgcctcagcctgttcaga catacaacaatcctggaccatcccgtcagaatagatcgactacaaagccagggggaggtaaaagtatgcctcagaccact ccagacggaatatggactgagataatggaacagccgaaacagaggggcttacggttccgttatgagtgtgagggacgatc agctggtagcatccccggggagagcagcacaaatgagaagaagaccttcccaacaataaagattcacaactacactggta ctgctgtaatcgttgtgtcatgtgtcaccaaggacacaccatacgacccccacccccataatttggtgggcagggactgt aagaggggagtgtgcacactcaaggtcaaggacactaatactatcacctttccacatttgggcattcaatgtgctaaaaa gaaggatgtgacagataatctaaggcagcgcaaagagattaatgttgatccctatcaaagtggatttaagcatatgaata aagctaacaacatagatctgaacgtagtacgactctgtttccaagtcttcctgccggatgaccagggtaaaatcactcgc atcgtaccacctgtagtctcccatcctatacatgacaaaaaatctctgaatgagttagttatctgtagagtggacaggtc ctctggtaaagctaaaggtggagatgaggtgttcctattgtgtgagaaaataaacagagatgacataggagtgaggtttt accaggagaacagctctggtgatactatctgggaagattacggtgaattcagtgttaatgacatccatcgtcagtacgct atcgtgttcaaaacacccccgtataaagacaccctgataagtcaaccagtagaagtcagaatgcagctgaaacgacaaaa tgacgcagagacaagtgaagcgattcctttcatttatatgccagaagatcctgatccagaccgaatcatggagaagagaa aacgtaaggcagatcaactgaaaagctggggattcaacttggattcttccagcatgtctggagatgacatcaaacagaga ctgaagctcaaagccactaaatcaaggattaaagcagaagcccatacacctgacataccgctatgggacaacatagataa tgtaccaggtcctagccaatcagctgtcattgaatcatcctcatcctctgtgaacgtaaggtccagtgacaacacggcca tgggtaatgttacaatcactgcctcggaaaatgtgcaaaggcaactagctctattaccagaacaaattcaaaatcaaatt cttcaacagttggccatgcagaaactacgtgaccaagcgagactccgtcaaattgaggatagcctctctcagcctcctcc tacctcctctaatttcttaggtgatttcaattcccagaattcccaattcacaatggctcagcagcagactgcatcaggag ggcccctgataggtgatgtgtcaatgcagcaggcagctgctaacaatcaaaatgacatctcgcacgctgttgacttgaat atggtacaaacttacttaggtgaccaaggacaaaatgtgtctttcgatagtttcggttccctgacggggaacattatgaa catagattgtgatagcaatgtggcagctaatgttaacatcagcagtacggacacttcacagtcccaccagtacacgatgc agcagaatgaggtcgatgcagcaatccaatctctacagtctcaatcctga |
Protein
Protein ID | pfu_aug1.0_2007.1_29946.t1 |
---|---|
Definition | - |
>pfu_aug1.0_2007.1_29946.t1 MANLSSADLQRFILGDTDDTIIQQLDFTGPTDNEYSYVQNLIAHSQPAPQPVQTYNNPGPSRQNRSTTKPGGGKSMPQTT PDGIWTEIMEQPKQRGLRFRYECEGRSAGSIPGESSTNEKKTFPTIKIHNYTGTAVIVVSCVTKDTPYDPHPHNLVGRDC KRGVCTLKVKDTNTITFPHLGIQCAKKKDVTDNLRQRKEINVDPYQSGFKHMNKANNIDLNVVRLCFQVFLPDDQGKITR IVPPVVSHPIHDKKSLNELVICRVDRSSGKAKGGDEVFLLCEKINRDDIGVRFYQENSSGDTIWEDYGEFSVNDIHRQYA IVFKTPPYKDTLISQPVEVRMQLKRQNDAETSEAIPFIYMPEDPDPDRIMEKRKRKADQLKSWGFNLDSSSMSGDDIKQR LKLKATKSRIKAEAHTPDIPLWDNIDNVPGPSQSAVIESSSSSVNVRSSDNTAMGNVTITASENVQRQLALLPEQIQNQI LQQLAMQKLRDQARLRQIEDSLSQPPPTSSNFLGDFNSQNSQFTMAQQQTASGGPLIGDVSMQQAAANNQNDISHAVDLN MVQTYLGDQGQNVSFDSFGSLTGNIMNIDCDSNVAANVNISSTDTSQSHQYTMQQNEVDAAIQSLQSQS |