Gene
Gene Model ID | pfu_aug1.0_218546.1_14226 |
---|---|
Locus | scaffold218546.1 : 1 ... 516 : - |
To GenomeBrowser | scaffold218546.1:1..516 |
Genes list of scaffold | scaffold218546.1 |
Synonym | pfu_aug2.0_797.1_24411 |
Manual annotation
Study field | Reproduction |
---|---|
Gene name | cytidine deaminase |
Description | Best hit to EU101721 (abalone). 163 bits, 1e-38 |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_218546.1_14226.t1 | 1 | 1 | dCMP_cyt_deam_1 | 9 | 105 | 9.6e-18 | 63.7 | 1.7e-21 | 1.2e-17 | 63.3 |
pfu_aug1.0_218546.1_14226.t1 | 2 | 1 | dCMP_cyt_deam_2 | 10 | 74 | 5.1e-08 | 32.9 | 2.6e-11 | 1.9e-07 | 31.1 |
pfu_aug1.0_218546.1_14226.t1 | 2 | 2 | dCMP_cyt_deam_2 | 125 | 137 | 5.1e-08 | 32.9 | 0.17 | 1300.0 | -0.7 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_218546.1_14226.t1 | gi|159146785|gb|ABW90692.1| | cytidine deaminase [Haliotis diversicolor supertexta] | 8.0e-39 |
Transcript
Transcript ID | pfu_aug1.0_218546.1_14226.t1 |
---|---|
Definition | - |
>pfu_aug1.0_218546.1_14226.t1 atgaatcacggaagagacaagcgtattcaggacttggtgaaggcagcgatagaggtcaaagccaacgtctattgtcctta cagcaactttcgtgttggtgcttcactgctgacagaaaacgatgttattataacaggttgtaacgttgagaacgcatctt atgggctatctgtttgtgcagaacgagtagctattatgtttgctgtgtcacaaggtcataccaagttcaaggctgcggca gtttcatgtgacattaaaggatacttcaaagctccatgtggtgcttgtagacagttttattccgagttcaactttgacct tgacctttacctagtgaagccagacaatacagtaaaatgtgtcaaaatcagagacgttttaccgatggcgtttacaccgc agtcactcgaggaagacaggatctaa |
Protein
Protein ID | pfu_aug1.0_218546.1_14226.t1 |
---|---|
Definition | - |
>pfu_aug1.0_218546.1_14226.t1 MNHGRDKRIQDLVKAAIEVKANVYCPYSNFRVGASLLTENDVIITGCNVENASYGLSVCAERVAIMFAVSQGHTKFKAAA VSCDIKGYFKAPCGACRQFYSEFNFDLDLYLVKPDNTVKCVKIRDVLPMAFTPQSLEEDRI |