Gene
Gene Model ID | pfu_aug1.0_2301.1_44329 |
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Locus | scaffold2301.1 : 3209 ... 26765 : - |
To GenomeBrowser | scaffold2301.1:3209..26765 |
Genes list of scaffold | scaffold2301.1 |
Synonym | pfu_aug2.0_170.1_00356 |
Manual annotation
Study field | 20 basic cell biology |
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Gene name | Dicer |
Description | NCBI BlastP top hit to Branchiostoma floridae hypothetical protein BRAFLDRAFT_202604 [XP_002610617.1] |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_2301.1_44329.t1 | 1 | 1 | Helicase_C | 508 | 557 | 9.3e-13 | 47.8 | 1.0e-15 | 2.2e-12 | 46.6 |
pfu_aug1.0_2301.1_44329.t1 | 1 | 1 | Dicer_dimer | 604 | 695 | 1.1e-28 | 98.7 | 2.4e-31 | 5.1e-28 | 96.7 |
pfu_aug1.0_2301.1_44329.t1 | 1 | 1 | PAZ | 783 | 949 | 5.1e-30 | 103.5 | 5.4e-33 | 1.1e-29 | 102.4 |
pfu_aug1.0_2301.1_44329.t1 | 2 | 1 | Ribonuclease_3 | 1311 | 1327 | 2.0e-07 | 31.4 | 7.3e-05 | 0.16 | 12.4 |
pfu_aug1.0_2301.1_44329.t1 | 2 | 2 | Ribonuclease_3 | 1341 | 1360 | 2.0e-07 | 31.4 | 1.5e-05 | 0.032 | 14.6 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_2301.1_44329.t1 | gi|348544424|ref|XP_003459681.1| | 0.0 |
Transcript
Transcript ID | pfu_aug1.0_2301.1_44329.t1 |
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Definition | - |
>pfu_aug1.0_2301.1_44329.t1 atgtcgtattttgtaatcgtcaagacacagttgctgaaagagatggtgtttttgggcagtgaccctccaccccccaagcg gctgccgagacacttcagaaatgatgacattcctacagatacattcactccaagggcatatcaggcctctgtttccaata aagaagtcaaggacatctcaaatgaggacaacagttacatgtccgattctgatggcagtcttgtcccagttcctgacaat gagggttccatcttttacttgtctcaagtaatccaacatcatacagatctttgtgtatcaaagttttatgatgacgacgg ggaacagttcaaatggaacaaagaacagtggtcagatcatgtaaagtcacatcatatcattgtcatgtcacctaaactct tttgtacaatgctcagtctgaatgcaatcaaggcctctcaactcaaccttgtgatctttgatgaatgtcatcttattctt ggagatcatccgtacaaagatattatgaaccatttaaaaaaatctcaggattcagactcaaaaaggaaatatttacccag aattcttggtctaacctccagtttcactagcaagaaatgccgagatccaaaagagcttgagtcatccattatttcactgg agaggagtctattatcaaaagcagaaacagcaactctcgttatttctgaaagatatggcctgaaaccaaaggagcttgtt gtcaaatgtgaaaattatgaagataaaactggaatatctatattattggagaatatattacatgatgccttagactttct acacgacagtaacgcagtaagtgaaggagaagatgaccaggatccctgctcaatacccataacagctctctgtgaatgtc tacacatactccacacactaggaccttggtgtgcagactgtatagctaagatgctcattaatcaattagaaaaaatagat aaatttgaaactggcgtcataaataaaaaacttcttcacttctgttcaacacagctacgaatgatttcagcaatatttga ttctcagttttcacctaactacgatgtagaagaattactcatgtacacctctcctaaagttcgaagacttgttcatcacc tacgaaaatacaaacctgagtgcgactttatgattattagcagtgccgatggagagctgggtgagggaatgctgggtatt gatgatagcgagtctgatctgtctgatgattccgatttctcagaggatgacggaaacgaacgagaaaaccgtaatgtgat tcatgtagcggtgaaaaaagaaacaagtgaagagaatggtcttgaccctttactaggggatacagagaagtacttatgtg gcattgtttttgtagaggacagaaatgttgctttggtgctgaataaatttctagaggaagtgtttgcctgggatgaaact ctctgctttgtcaagtcccatcacatcacaggacatggtataaagggtgctgtaaccaagaaagagaatggtaaattgta caggaaacaagaggatgttttgaggaagtttcgcatgcaggacttgaatctccttatatccactagtgttctagaggagg gtattgatgtacccaagtgcaatcttattgtcaagtttgacccacccaaaagttacaaatcttacagccagtcaaaggtt ctaatcgaaagaaattcagaggaaacgacacatcagacagagaatcttaatggtgatgacaacagcgatatatctcctcc atatataccaaaccctgatcaaccacgcatttctgtcacactcaactcagctatagctttagtcaacaggtactgtgcca agctacccagtgatgctttcacccacttgacaccaaaatgctcggtagaggaaattgatgtagagggtagcaccatgtat aaagcaaatctccgcttgccaattaactctccattcaaagaacttgtacaggggtctccaatgcccacagtgatgctagc caaaagagaggtggcactgagaatgtgtgaagctctccacaagtcaggtgagttagatgataccctgatgccggtaggta aggagctatacaacatagaggaggaagaggaggaggtgaaggactgggaggcagaggatctgtatggtgaggtcagacca ggaactaccaaacgtaaacagtattactacaaacggctaagcaaattcctgaggtanatatttgataatgtattacggct tgagaaggaccctatggaattcaaacctcagcaatcggagcttggttacattgttgtaccacttctcaaaaattctgaaa gctgtggacacactattgattgggaattcattagtaaactagagcagtccaagcatcatgtcaaaaggaatatattggac tcaaagagagaaccgtttgtatttaacaaagaggagtactctgatgctgtagtcatgccgtcctataggaacacagatca accccagccattctatgtggctgaaatccgtagtgatttgaatcctctttctccttttccatccccagagctctatgaaa ctttcagcaagtactatacaaccaagtatggtttaacaatcacaaactttgaacagccattgttagatgtagatcatacg tctgcccgattaaatctcctaacaccacgatacatgaaccaaaagggtgttgccttgccaaccagcagtgcagagacgaa gaaagctagacgtgagaatttacaacagaaacagatcctggtagctgaactgtgtgaagtacacgtgtttcctgcctcac tgtggaaaaaggcagtatgtctacccactatactgtacagaatcaattacctccttgtggcagaagaaatgagaattaaa atctccagtgagactggaattggattaagagatctgccaagtgattttgaatttgaaccgttggattttggttttgaaat tgtcaacggcaaagaaaactttacttctaattctgctgttttggatgaatctaagatggatgatacagaggacagtaata ctgaggaatctccgagctcagacaaaggcagctattccacaaacctgagtgacgagtctccaagtgaaaaccacacaaaa accaacatatctgatcagatctcatctagtcaagctaactgtgatactactcgagttctccagaaacgccggtcatctct aacggtaggaaacctcttttctagcgagggtcttcaaaattactataataactcagccctctgtgataattctgactgtg atacagatgatgatgaaaccagtgataataaaaaagaaaactccaaagaagatgatcaaagtaaggctagtgattctgta gaggacggggagtgtggtatgaataatcacataaacattcatgataccaaggctagtgacggtaaggctcgtgataaaat ttccaaacttagcaatggatcaaaggctgatgataaatctattaatgctttacagcatgaccaaatttcaccaaagaaag agaaaatggtgaatggtgaatcaaatgtttcagcttctgagagcaggttcatgaacggctgggcagatgctgcagacagt aagatggatataacagattatgttactgactccattcaaaaattatctgtgtctgatacagaaaaggacaactccagaag aacatctgatgtaggaaaaagtggaaataaagaggacgttttcagtggaatgtcaaggtttatggctgatggaaaaagtg cgatgactgatacaggaaaaaatatcaaaatgaatgaagagaaaatcagttttcccgatcccaaactttctttagatgaa gacaaggacctgaccaagtttgtaggtcctaatccttgtaccatactccaggcctttacaatgtccaatgccaacgattt cttctgcttagagcgtttggagacaattggtgattcattcctcaagtatgccattactgagaatgaggaggaggagacag agagggtggagttagaggttcccaaggccctgggggatatctttgaatcattggctggtgctatctacttagacagtggt atgtctctagacgtcgtgtggagggtgtactacagaatcatgaaacctcagattgacaagtatctgaagagcattccaaa atctcctgttagagaattgttggaaatggaaccagaaactgccaagtttgagaagccagagcggacgttggagggcaaga ttcgtgtaaatgttaatgtggttggcaaaggtgcatacacaggagtcggcagaaattaccgtattgccaaaagtgcagca gctaaaaaagctctacgttccattaagaccttacaggcagagggtctaatttaa |
Protein
Protein ID | pfu_aug1.0_2301.1_44329.t1 |
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Definition | - |
>pfu_aug1.0_2301.1_44329.t1 MSYFVIVKTQLLKEMVFLGSDPPPPKRLPRHFRNDDIPTDTFTPRAYQASVSNKEVKDISNEDNSYMSDSDGSLVPVPDN EGSIFYLSQVIQHHTDLCVSKFYDDDGEQFKWNKEQWSDHVKSHHIIVMSPKLFCTMLSLNAIKASQLNLVIFDECHLIL GDHPYKDIMNHLKKSQDSDSKRKYLPRILGLTSSFTSKKCRDPKELESSIISLERSLLSKAETATLVISERYGLKPKELV VKCENYEDKTGISILLENILHDALDFLHDSNAVSEGEDDQDPCSIPITALCECLHILHTLGPWCADCIAKMLINQLEKID KFETGVINKKLLHFCSTQLRMISAIFDSQFSPNYDVEELLMYTSPKVRRLVHHLRKYKPECDFMIISSADGELGEGMLGI DDSESDLSDDSDFSEDDGNERENRNVIHVAVKKETSEENGLDPLLGDTEKYLCGIVFVEDRNVALVLNKFLEEVFAWDET LCFVKSHHITGHGIKGAVTKKENGKLYRKQEDVLRKFRMQDLNLLISTSVLEEGIDVPKCNLIVKFDPPKSYKSYSQSKV LIERNSEETTHQTENLNGDDNSDISPPYIPNPDQPRISVTLNSAIALVNRYCAKLPSDAFTHLTPKCSVEEIDVEGSTMY KANLRLPINSPFKELVQGSPMPTVMLAKREVALRMCEALHKSGELDDTLMPVGKELYNIEEEEEEVKDWEAEDLYGEVRP GTTKRKQYYYKRLSKFLRXIFDNVLRLEKDPMEFKPQQSELGYIVVPLLKNSESCGHTIDWEFISKLEQSKHHVKRNILD SKREPFVFNKEEYSDAVVMPSYRNTDQPQPFYVAEIRSDLNPLSPFPSPELYETFSKYYTTKYGLTITNFEQPLLDVDHT SARLNLLTPRYMNQKGVALPTSSAETKKARRENLQQKQILVAELCEVHVFPASLWKKAVCLPTILYRINYLLVAEEMRIK ISSETGIGLRDLPSDFEFEPLDFGFEIVNGKENFTSNSAVLDESKMDDTEDSNTEESPSSDKGSYSTNLSDESPSENHTK TNISDQISSSQANCDTTRVLQKRRSSLTVGNLFSSEGLQNYYNNSALCDNSDCDTDDDETSDNKKENSKEDDQSKASDSV EDGECGMNNHINIHDTKASDGKARDKISKLSNGSKADDKSINALQHDQISPKKEKMVNGESNVSASESRFMNGWADAADS KMDITDYVTDSIQKLSVSDTEKDNSRRTSDVGKSGNKEDVFSGMSRFMADGKSAMTDTGKNIKMNEEKISFPDPKLSLDE DKDLTKFVGPNPCTILQAFTMSNANDFFCLERLETIGDSFLKYAITENEEEETERVELEVPKALGDIFESLAGAIYLDSG MSLDVVWRVYYRIMKPQIDKYLKSIPKSPVRELLEMEPETAKFEKPERTLEGKIRVNVNVVGKGAYTGVGRNYRIAKSAA AKKALRSIKTLQAEGLI |