Gene
Gene Model ID | pfu_aug1.0_23929.1_11583 |
---|---|
Locus | scaffold23929.1 : 5120 ... 8921 : - |
To GenomeBrowser | scaffold23929.1:5120..8921 |
Genes list of scaffold | scaffold23929.1 |
Synonym | NA |
Manual annotation
Study field | Biomineralization |
---|---|
Gene name | Pfty2B |
Description | NCBI Blastp search |
mRNA evidence |
Study field | Biomineralization |
---|---|
Gene name | Pfty2B |
Description | NCBI BLASTP best hit to BAF42772 |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_23929.1_11583.t1 | 1 | 1 | Tyrosinase | 1 | 165 | 1.2e-22 | 81.2 | 2.2e-26 | 3.2e-22 | 79.7 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_23929.1_11583.t1 | gi|119852229|dbj|BAF42772.1| | tyrosinase-like protein 2 [Pinctada fucata] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues | |
mantleEdge | 1 |
mantlePallium | 1 |
Transcript
Transcript ID | pfu_aug1.0_23929.1_11583.t1 |
---|---|
Definition | - |
>pfu_aug1.0_23929.1_11583.t1 gtatgaagaagcgttacagcgaattcgtcccggcgtggcattgtgctattgggattcaacattagactaccttatgccag gagatagtcagcgaagaacggtagccttctccgacgaacttttcggaaatgggcaaggtgcagttataaatagtcagttt gcaaattggagactttctgatgatactcctcttataagagagatcggacgagtaaacacgagtttaacacgacctggtat tgtagaccttattctaacagatccaaggataaatcgtcatcgatggatagttaatgcaggaacacagacaaatcaaaatc ccagatttggctttattgaccctgatagcgggagaagacatagtttggagagggaacatgataatgctcatgtgtgggtg ggcggaatcatggtgaacgtggcaaggtcgcctgaagaccccgtgttttggtttcatcattgttttgtcgactacgtttg ggagcttttccgacgaaaaattgacccatttgatagattcgatcttcgcaatgactatcctttcgactcattaaatgaag agcatagagcttacgagagaatggccggttttccagcgtacgtaaatatcgacgggtatcacagattcctcaggagaagg tatgcgcctcatcctagatgcagtaacaactgtggtggctcaagatttcttaggtgtaataacattggtccaatgggcaa cccttaccgacgatgtgtatctcttgaaatcgattctgatgtggtgccagcagcggcggctgattccccagcaatggagg gatttgtaggattcagaagtccagcaatgatggctaccggtgccgctgcagctagagtttccatacaagccacatatcaa gtggcaatccaagcaacaataggtcaacgacgaacaattttcaacggtccaaacttcactccctcgtataatgattttag actttaa |
Protein
Protein ID | pfu_aug1.0_23929.1_11583.t1 |
---|---|
Definition | - |
>pfu_aug1.0_23929.1_11583.t1 YEEALQRIRPGVALCYWDSTLDYLMPGDSQRRTVAFSDELFGNGQGAVINSQFANWRLSDDTPLIREIGRVNTSLTRPGI VDLILTDPRINRHRWIVNAGTQTNQNPRFGFIDPDSGRRHSLEREHDNAHVWVGGIMVNVARSPEDPVFWFHHCFVDYVW ELFRRKIDPFDRFDLRNDYPFDSLNEEHRAYERMAGFPAYVNIDGYHRFLRRRYAPHPRCSNNCGGSRFLRCNNIGPMGN PYRRCVSLEIDSDVVPAAAADSPAMEGFVGFRSPAMMATGAAAARVSIQATYQVAIQATIGQRRTIFNGPNFTPSYNDFR L |