Gene
Gene Model ID | pfu_aug1.0_23957.1_47616 |
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Locus | scaffold23957.1 : 1 ... 6639 : + |
To GenomeBrowser | scaffold23957.1:1..6639 |
Genes list of scaffold | scaffold23957.1 |
Synonym | pfu_aug2.0_224.1_13820 |
Manual annotation
Study field | Environmental Response |
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Gene name | latrophilin Cirl-like isoform |
Description | 7tm_2 domain; 52% identity to Latrophilin-3 [Camponotus floridanus] |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_23957.1_47616.t1 | 1 | 1 | 7tm_2 | 2 | 97 | 1.0e-22 | 80.4 | 1.9e-26 | 1.4e-22 | 79.9 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_23957.1_47616.t1 | gi|332017727|gb|EGI58401.1| | Latrophilin-3 [Acromyrmex echinatior] | 6.0e-27 |
Transcript
Transcript ID | pfu_aug1.0_23957.1_47616.t1 |
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Definition | - |
>pfu_aug1.0_23957.1_47616.t1 gaggtgtttgaggcggagcgctcacggagactttggtattatatagtgggttatggagcaccactcatcatagtgggtgt gtcagcaggggtcaaacatgaaggatacggcacagacaaatattgctggttaagtacacaagatggattcatatggagtt ttgtggggccggtcatagtggtactctttatcaatgtgataatgcttagtattgctgtgtacatgatgtgtaagcatgct catactttagcctcatcactgagaacgaaagaaaaatcacgacttcagaaagtcaacatttacttaagttttggagtggg cgacgacgcaggtcctcctcgtcaacattggaaaaaggtcacaaaggtaaatataggaaaagtgatccccgcagcgattc tgaattttttcacaagcacaggaaaggatacaaacagtgtgttcactagaaatggttcagcacgtaccagcaagcagaac ggtcagctgactgaccaggtgctgcacatttatcacgagatagatggtatggcaggtgacctctccgtcatggattgttc cgttatagatacagagtatgtctccgagtactgccagaatcaaatgcaggtctccatggaaaagaggcggtactcttcag ggtcggaggatgccaacgactctactgatgatgctgttgaaaataaaaatagactatcggttctatctgatgactccgct atcaaaaacatttcggattttgcttcttctgaggctgatgcagatgagcagacaaatcttccagtatga |
Protein
Protein ID | pfu_aug1.0_23957.1_47616.t1 |
---|---|
Definition | - |
>pfu_aug1.0_23957.1_47616.t1 EVFEAERSRRLWYYIVGYGAPLIIVGVSAGVKHEGYGTDKYCWLSTQDGFIWSFVGPVIVVLFINVIMLSIAVYMMCKHA HTLASSLRTKEKSRLQKVNIYLSFGVGDDAGPPRQHWKKVTKVNIGKVIPAAILNFFTSTGKDTNSVFTRNGSARTSKQN GQLTDQVLHIYHEIDGMAGDLSVMDCSVIDTEYVSEYCQNQMQVSMEKRRYSSGSEDANDSTDDAVENKNRLSVLSDDSA IKNISDFASSEADADEQTNLPV |